Considerations when investigating lncRNA function in vivo. (Q27691450)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124674%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

2 references

17 November 2020

19 January 2021

Considerations when investigating lncRNA function in vivo (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124674%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

1 reference

17 November 2020

1 reference

19 January 2021

1

1 reference

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12 March 2020

Adrian Peter Bird

4

1 reference

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12 March 2020

Neil Brockdorff

5

1 reference

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12 March 2020

Denis Duboule

6

1 reference

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12 March 2020

Anne Ephrussi

7

1 reference

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12 March 2020

Anne Ferguson-Smith

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124674%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

Wilfried Haerty

10

1 reference

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12 March 2020

Douglas Higgs

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124674%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

Eric A Miska

12

1 reference

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12 March 2020

Chris Ponting

13

1 reference

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12 March 2020

9

Thomas R Gingeras

1 reference

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12 March 2020

author name string

Asifa Akhtar

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124674%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

Denise P Barlow

3

1 reference

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12 March 2020

language of work or name

English

0 references

publication date

14 August 2014

4 references

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12 March 2020

17 November 2020

19 January 2021

3 references

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12 March 2020

17 November 2020

19 January 2021

3

2 references

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12 March 2020

page(s)

e03058

2 references

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Creative Commons Attribution 4.0 International

12 March 2020

copyright license

2 references

17 November 2020

iCLIP: protein-RNA interactions at nucleotide resolution

19 January 2021

0 references

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes

20 March 2017

1 reference

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The "Observer Effect" in genome-wide surveys of protein-RNA interactions

20 March 2017

1 reference

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Advances in understanding chromosome silencing by the long non-coding RNA Xist

20 March 2017

1 reference

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An integrated encyclopedia of DNA elements in the human genome

20 March 2017

1 reference

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The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult

20 March 2017

1 reference

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The H19 lincRNA is a developmental reservoir of miR-675 that suppresses growth and Igf1r

20 March 2017

1 reference

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Tsx produces a long noncoding RNA and has general functions in the germline, stem cells, and brain

20 March 2017

1 reference

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Direct visualization of the co-transcriptional assembly of a nuclear body by noncoding RNAs

20 March 2017

1 reference

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A coding-independent function of gene and pseudogene mRNAs regulates tumour biology

20 March 2017

1 reference

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Balanced gene regulation by an embryonic brain ncRNA is critical for adult hippocampal GABA circuitry

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

RNA polymerase V transcription guides ARGONAUTE4 to chromatin

20 March 2017

1 reference

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An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles

20 March 2017

1 reference

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MEN epsilon/beta nuclear-retained non-coding RNAs are up-regulated upon muscle differentiation and are essential components of paraspeckles

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

20 March 2017

1 reference

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Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Site-specific transformation of Drosophila via phiC31 integrase-mediated cassette exchange

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Multiple knockout mouse models reveal lincRNAs are required for life and brain development

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

RNAi factors are present and active in human cell nuclei

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Transvection effects involving DNA methylation during meiosis in the mouse

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Target mimicry provides a new mechanism for regulation of microRNA activity

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

The non-coding Air RNA is required for silencing autosomal imprinted genes

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Localized and transient transcription of Hox genes suggests a link between patterning and the segmentation clock

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Paraspeckles are subpopulation-specific nuclear bodies that are not essential in mice

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Regional loss of imprinting and growth deficiency in mice with a targeted deletion of KvDMR1

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Deletion of the H19 transcription unit reveals the existence of a putative imprinting control element

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Landscape of transcription in human cells

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

A gene complex controlling segmentation in Drosophila

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Mass-spectrometry-based draft of the human proteome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

A draft map of the human proteome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Modular regulatory principles of large non-coding RNAs

7 April 2017

1 reference

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Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Transcriptional regulatory functions of nuclear long noncoding RNAs

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Detecting and characterizing circular RNAs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Functional consequences of splicing of the antisense transcript COOLAIR on FLC transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

A guide to genome engineering with programmable nucleases

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Extensive localization of long noncoding RNAs to the cytosol and mono- and polyribosomal complexes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

DICE, an efficient system for iterative genomic editing in human pluripotent stem cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Divergent transcription: a driving force for new gene origination?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Evf2 (Dlx6as) lncRNA regulates ultraconserved enhancer methylation and the differential transcriptional control of adjacent genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Noncoding RNAs of the Ultrabithorax domain of the Drosophila bithorax complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Targeted disruption of Hotair leads to homeotic transformation and gene derepression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Multiple enhancers regulate Hoxd genes and the Hotdog LncRNA during cecum budding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Multiplexed activation of endogenous genes by CRISPR-on, an RNA-guided transcriptional activator system

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Noncoding RNA and Polycomb recruitment.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Loss of the abundant nuclear non-coding RNA MALAT1 is compatible with life and development

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Comprehensive interrogation of natural TALE DNA-binding modules and transcriptional repressor domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Malat1 is not an essential component of nuclear speckles in mice

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

ChromHMM: automating chromatin-state discovery and characterization

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Conserved function of lincRNAs in vertebrate embryonic development despite rapid sequence evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

The genomic binding sites of a noncoding RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Biogenesis and function of nuclear bodies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Structural and functional differences in the long non-coding RNA hotair in mouse and human

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Disruption of a conserved region of Xist exon 1 impairs Xist RNA localisation and X-linked gene silencing during random and imprinted X chromosome inactivation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Locked nucleic acids (LNAs) reveal sequence requirements and kinetics of Xist RNA localization to the X chromosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

The H19 locus: role of an imprinted non-coding RNA in growth and development.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

BC1 regulation of metabotropic glutamate receptor-mediated neuronal excitability.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

How to build a paraspeckle

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Genomic imprinting at the mammalian Dlk1-Dio3 domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Non-coding RNAs in imprinted gene clusters

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Antisense technology: a selective tool for gene expression regulation and gene targeting

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

In situ dissection of a Polycomb response element in Drosophila melanogaster

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Loss of imprinting at the Dlk1-Gtl2 locus caused by insertional mutagenesis in the Gtl2 5' region

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

The roX genes encode redundant male-specific lethal transcripts required for targeting of the MSL complex

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

LincRNA-p21 activates p21 in cis to promote Polycomb target gene expression and to enforce the G1/S checkpoint

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Long non-coding RNAs learn the importance of being in vivo

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4132285

Combined RNAi and localization for functionally dissecting long noncoding RNAs.

2 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.03058

Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.03058

Tumour-suppressor activity of H19 RNA

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.7554%2FELIFE.03058

Xist-deficient mice are defective in dosage compensation but not spermatogenesis

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/25124674

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/25124674

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Hox C cluster genes are dispensable for overall body plan of mouse embryonic development

1 reference

https://pubmed.ncbi.nlm.nih.gov/25124674

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.7554/ELIFE.03058

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124674%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124674%20AND%20SRC:MED&resulttype=core&format=json

12 March 2020

PubMed publication ID

25124674

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25124674%20AND%20SRC:MED&resulttype=core&format=json