Mass-spectrometry-based draft of the human proteome (Q29617249)

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Karsten Schnatbaum

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Ulf Reimer

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Marcus Bantscheff

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Mikhail M Savitski

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Judith Schlegl

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Simone Lemeer

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Hannes Hahne

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Amin Moghaddas Gholami

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Marcus Lieberenz

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Lars Butzmann

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Harald Marx

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Holger Wenschuh

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Martin Mollenhauer

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Franz Faerber

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30 April 2017

publication date

29 May 2014

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30 April 2017

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30 April 2017

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volume

509

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30 April 2017

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issue

7502

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30 April 2017

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page(s)

582-587

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The quantitative proteome of a human cell line.

5 June 2020

cites work

1 reference

12 December 2020

Cell type-specific nuclear pores: a case in point for context-dependent stoichiometry of molecular machines

1 reference

12 December 2020

Identification of missing proteins in the neXtProt database and unregistered phosphopeptides in the PhosphoSitePlus database as part of the Chromosome-centric Human Proteome Project

1 reference

12 December 2020

Integrated proteomic analysis of post-translational modifications by serial enrichment.

1 reference

12 December 2020

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

1 reference

12 December 2020

Ribosome profiling provides evidence that large noncoding RNAs do not encode proteins

1 reference

12 December 2020

Computational prediction of proteotypic peptides for quantitative proteomics.

1 reference

12 December 2020

Long noncoding RNAs are rarely translated in two human cell lines

1 reference

12 December 2020

Towards a knowledge-based Human Protein Atlas

1 reference

12 December 2020

Reduced annexin A6 expression promotes the degradation of activated epidermal growth factor receptor and sensitizes invasive breast cancer cells to EGFR-targeted tyrosine kinase inhibitors

1 reference

12 December 2020

IPM: An integrated protein model for false discovery rate estimation and identification in high-throughput proteomics

1 reference

12 December 2020

PaxDb, a database of protein abundance averages across all three domains of life

1 reference

12 December 2020

Mapping intact protein isoforms in discovery mode using top-down proteomics

1 reference

12 December 2020

Profiling core proteomes of human cell lines by one-dimensional PAGE and liquid chromatography-tandem mass spectrometry

1 reference

12 December 2020

A census of human soluble protein complexes

1 reference

12 December 2020

Considerations on selected reaction monitoring experiments: implications for the selectivity and accuracy of measurements

1 reference

12 December 2020

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

1 reference

12 December 2020

Landscape of transcription in human cells

1 reference

12 December 2020

Identification of MECL-1 (LMP-10) as the third IFN-gamma-inducible proteasome subunit

1 reference

12 December 2020

Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics

1 reference

12 December 2020

Global quantification of mammalian gene expression control

1 reference

12 December 2020

A large synthetic peptide and phosphopeptide reference library for mass spectrometry-based proteomics

1 reference

12 December 2020

Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins

1 reference

12 December 2020

Newly identified pair of proteasomal subunits regulated reciprocally by interferon gamma

1 reference

12 December 2020

Deep proteome and transcriptome mapping of a human cancer cell line

1 reference

12 December 2020

Targeted proteomic quantification on quadrupole-orbitrap mass spectrometer.

1 reference

12 December 2020

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

12 December 2020

Global proteome analysis of the NCI-60 cell line panel

1 reference

12 December 2020

Initial quantitative proteomic map of 28 mouse tissues using the SILAC mouse

1 reference

12 December 2020

Critical assessment of proteome-wide label-free absolute abundance estimation strategies

1 reference

12 December 2020

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

1 reference

12 December 2020

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

1 reference

12 December 2020

Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis.

1 reference

12 December 2020

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

1 reference

12 December 2020

The Chromosome-Centric Human Proteome Project for cataloging proteins encoded in the genome.

1 reference

12 December 2020

Non-coding RNA: Ribosomes, but no translation, for lincRNAs.

1 reference

12 December 2020

Update on activities at the Universal Protein Resource (UniProt) in 2013

1 reference

12 December 2020

Probability-based protein identification by searching sequence databases using mass spectrometry data

1 reference

12 December 2020

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity

1 reference

12 December 2020

Target-decoy approach and false discovery rate: when things may go wrong

1 reference

12 December 2020

Loss of olfactory receptor function in hominin evolution

1 reference

12 December 2020

Comparative proteomic analysis of eleven common cell lines reveals ubiquitous but varying expression of most proteins

1 reference

12 December 2020

State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project

1 reference

12 December 2020

Retinoic acid receptor alpha is associated with tamoxifen resistance in breast cancer

1 reference

12 December 2020

Epidermal growth factor receptor ligands as new extracellular targets for the metastasis-promoting S100A4 protein

1 reference

12 December 2020

Proteomic snapshot of the EGF-induced ubiquitin network

1 reference

12 December 2020

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30 April 2017

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5 June 2020

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