De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity (Q27704825)

25 September 2017

De novo design of protein homo-oligomers with modular hydrogen-bond network-mediated specificity (English)

1 reference

25 September 2017

0 references

2

1 reference

25 September 2017

David Baker

14

0 references

Chunfu Xu

object named as

Chunfu Xu

8

0 references

author name string

Scott E Boyken

1

1 reference

25 September 2017

Benjamin Groves

3

1 reference

25 September 2017

Robert A Langan

4

1 reference

25 September 2017

Gustav Oberdorfer

5

1 reference

25 September 2017

Alex Ford

6

1 reference

25 September 2017

Jason M Gilmore

7

1 reference

25 September 2017

Frank DiMaio

9

1 reference

25 September 2017

Jose Henrique Pereira

10

1 reference

25 September 2017

Georg Seelig

12

1 reference

25 September 2017

Peter H Zwart

13

1 reference

25 September 2017

language of work or name

English

0 references

publication date

1 May 2016

1 reference

25 September 2017

1 reference

25 September 2017

352

1 reference

25 September 2017

6286

1 reference

25 September 2017

680-687

1 reference

Native protein sequences are close to optimal for their structures

25 September 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

A Synthetic Coiled-Coil Interactome Provides Heterospecific Modules for Molecular Engineering

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

High-resolution protein design with backbone freedom

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Crystal structure of GCN4-pIQI, a trimeric coiled coil with buried polar residues

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Buried polar residues in coiled-coil interfaces

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Buried polar residues and structural specificity in the GCN4 leucine zipper

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

A novel genetic system to detect protein-protein interactions

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Design of a Novel Globular Protein Fold with Atomic-Level Accuracy

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Principles for designing ideal protein structures

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Computational Design of Self-Assembling Protein Nanomaterials with Atomic Level Accuracy

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

A De Novo Protein Binding Pair By Computational Design and Directed Evolution

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Computational Design of Proteins Targeting the Conserved Stem Region of Influenza Hemagglutinin

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Computational design of water-soluble α-helical barrels

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Folding DNA to create nanoscale shapes and patterns

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

RosettaScripts: a scripting language interface to the Rosetta macromolecular modeling suite

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Modeling symmetric macromolecular structures in Rosetta3

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Enzymatic assembly of DNA molecules up to several hundred kilobases

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Phasercrystallographic software

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

PHENIX: a comprehensive Python-based system for macromolecular structure solution

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Coot: model-building tools for molecular graphics

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

MolProbity: all-atom contacts and structure validation for proteins and nucleic acids

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

The two-hybrid system: a method to identify and clone genes for proteins that interact with a protein of interest

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

The PSIPRED protein structure prediction server

21 April 2017

1 reference

https://api.crossref.org/works/10.1126/SCIENCE.AAD8865

Identification of protein coding regions by database similarity search

21 April 2017

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAD8865

Processing of X-ray diffraction data collected in oscillation mode

21 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

DNA nanotechnology from the test tube to the cell.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Combined covalent-electrostatic model of hydrogen bonding improves structure prediction with Rosetta

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

De novo design of a transmembrane Zn²⁺-transporting four-helix bundle

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Structural DNA nanotechnology: state of the art and future perspective

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

High-throughput SAXS for the characterization of biomolecules in solution: a practical approach

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

A hydrogen bond network in the active site of Anabaena ferredoxin-NADP(+) reductase modulates its catalytic efficiency

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Accurate SAXS profile computation and its assessment by contrast variation experiments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Computational Design of a Protein-Based Enzyme Inhibitor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

A basis set of de novo coiled-coil peptide oligomers for rational protein design and synthetic biology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

MICAN: a protein structure alignment algorithm that can handle Multiple-chains, Inverse alignments, C(α) only models, Alternative alignments, and Non-sequential alignments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Computational protein design with explicit consideration of surface hydrophobic patches

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

RosettaRemodel: a generalized framework for flexible backbone protein design.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Characterizing flexible and intrinsically unstructured biological macromolecules by SAS using the Porod-Debye law.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

De novo designed peptides for biological applications.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Joint X-ray and neutron refinement with phenix.refine

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Probing Designability via a Generalized Model of Helical Bundle Geometry

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

FoXS: a web server for rapid computation and fitting of SAXS profiles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Simultaneous prediction of protein folding and docking at high resolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Design of protein-interaction specificity gives selective bZIP-binding peptides.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Structural specificity in coiled-coil interactions.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

A de novo designed protein protein interface

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Proteomic parsimony through bipartite graph analysis improves accuracy and transparency

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Sequence optimization and designability of enzyme active sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Do all backbone polar groups in proteins form hydrogen bonds?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Historical review: another 50th anniversary--new periodicities in coiled coils

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Coiled coils: a highly versatile protein folding motif

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Computational protein design

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Design and self-assembly of two-dimensional DNA crystals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

The crystal structure of the designed trimeric coiled coil coil-VaLd: implications for engineering crystals and supramolecular assemblies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Protein design automation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

A protein linkage map of Escherichia coli bacteriophage T7.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Predicting oligomerization states of coiled coils

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Local and macroscopic electrostatic interactions in single α-helices.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

High thermodynamic stability of parametrically designed helical bundles

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Hydrogen bonding networks tune proton-coupled redox steps during the enzymatic six-electron conversion of nitrite to ammonia.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Increasing the affinity of selective bZIP-binding peptides through surface residue redesign.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Networks of bZIP protein-protein interactions diversified over a billion years of evolution

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Fast determination of the optimal rotational matrix for macromolecular superpositions

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

On the role of electrostatic interactions in the design of protein-protein interfaces

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

De novo design of native proteins: characterization of proteins intended to fold into antiparallel, rop-like, four-helix bundles.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

A comparison of successful and failed protein interface designs highlights the challenges of designing buried hydrogen bonds

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Complex shapes self-assembled from single-stranded DNA tiles

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Polar Networks Control Oligomeric Assembly in Membranes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Computational redesign of protein-protein interaction specificity

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

A heterodimerizing leucine zipper coiled coil system for examining the specificity of a position interactions: amino acids I, V, L, N, A, and K.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

Hydrogen bonds and salt bridges across protein-protein interfaces

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5497568

A set of de novo designed parallel heterodimeric coiled coils with quantified dissociation constants in the micromolar to sub-nanomolar regime

27 November 2018

1 reference

12 December 2020

De novo design of orthogonal peptide pairs forming parallel coiled-coil heterodimers

1 reference

12 December 2020

Stability of 100 homo and heterotypic coiled-coil a-a' pairs for ten amino acids (A, L, I, V, N, K, S, T, E, and R)

1 reference

12 December 2020

A buried polar interaction imparts structural uniqueness in a designed heterodimeric coiled coil

1 reference

12 December 2020

The packing of α-helices: simple coiled-coils

1 reference

9 October 2024

https://opencitations.net/index/api/v1/references/10.1126/SCIENCE.AAD8865

Identifiers

DOI

10.1126/SCIENCE.AAD8865

1 reference

25 September 2017

1 reference

25 September 2017

PubMed publication ID

27151862

1 reference