Proteome-wide search reveals unexpected RNA-binding proteins in Saccharomyces cerevisiae (Q27932714)

Phenylacrylic acid decarboxylase PAD1 YDR538W

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Arf family GTPase ARF3 YOR094W

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MRNA-binding translational activator GIS2 YNL255C

1 reference

Glycerol 2-dehydrogenase (NADP(+)) GCY1 YOR120W

1 reference

S-adenosylmethionine-dependent methyltransferase YHR209W

1 reference

MRNA-binding ubiquitin-specific protease UBP3 YER151C

1 reference

Vtc1p YER072W

1 reference

Arp8p YOR141C

1 reference

Arc15p YIL062C

1 reference

Chaperone protein HSP26 YBR072W

1 reference

Pcs60p YBR222C

1 reference

Creative Commons Attribution 4.0 International

4

Patrick O Brown

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author name string

Nikoleta G Tsvetanova

series ordinal

1

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Daniel M Klass

series ordinal

2

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Julia Salzman

series ordinal

3

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language of work or name

English

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publication date

10 September 2010

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1 reference

1 December 2016

5

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page(s)

e12671

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issue

9

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copyright license

start time

10 September 2010

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression

20 March 2017

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Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system

20 March 2017

1 reference

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Molecular Basis for Bre5 Cofactor Recognition by the Ubp3 Deubiquitylating Enzyme

20 March 2017

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Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast

20 March 2017

1 reference

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Deubiquitination, a New Player in Golgi to Endoplasmic Reticulum Retrograde Transport

20 March 2017

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Global analysis of protein expression in yeast

20 March 2017

1 reference

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Role of the Vtc proteins in V-ATPase stability and membrane trafficking

20 March 2017

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Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

The Khd1 protein, which has three KH RNA-binding motifs, is required for proper localization of ASH1 mRNA in yeast

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

The intracellular location of two aminoacyl-tRNA synthetases depends on complex formation with Arc1p

20 March 2017

1 reference

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Significance analysis of microarrays applied to the ionizing radiation response

20 March 2017

1 reference

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Ash1p is a site-specific DNA-binding protein that actively represses transcription

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

She2p is a novel RNA-binding protein that recruits the Myo4p-She3p complex to ASH1 mRNA.

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

She2p, a novel RNA-binding protein tethers ASH1 mRNA to the Myo4p myosin motor via She3p

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Genetic and physical maps of Saccharomyces cerevisiae

20 March 2017

1 reference

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Identification of asymmetrically localized determinant, Ash1p, required for lineage-specific transcription of the yeast HO gene

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Asymmetric accumulation of Ash1p in postanaphase nuclei depends on a myosin and restricts yeast mating-type switching to mother cells

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Mechanism of human methyl-directed DNA methyltransferase and the fidelity of cytosine methylation

20 March 2017

1 reference

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Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

20 March 2017

1 reference

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Global analysis of protein activities using proteome chips

20 March 2017

1 reference

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Specific binding of human dihydrofolate reductase protein to dihydrofolate reductase messenger RNA in vitro

20 March 2017

1 reference

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RNA regulons: coordination of post-transcriptional events

20 March 2017

1 reference

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Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

The REM phase of gene regulation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Selection of RNA aptamers imported into yeast and human mitochondria

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Concordant regulation of translation and mRNA abundance for hundreds of targets of a human microRNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Implementation of GenePattern within the Stanford Microarray Database.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

The multifunctional protein glyceraldehyde-3-phosphate dehydrogenase is both regulated and controls colony-stimulating factor-1 messenger RNA stability in ovarian cancer

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Biological clocks and the coordination theory of RNA operons and regulons

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

RNA-binding proteins that inhibit RNA virus infection

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

mRNAs encoding polarity and exocytosis factors are cotransported with the cortical endoplasmic reticulum to the incipient bud in Saccharomyces cerevisiae.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Aconitase as Ironminus signSulfur Protein, Enzyme, and Iron-Regulatory Protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Differences in the RNA binding sites of iron regulatory proteins and potential target diversity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

The iron-responsive element-binding protein: localization of the RNA-binding site to the aconitase active-site cleft

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Aconitase, a two-faced protein: enzyme and iron regulatory factor

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Glyceraldehyde-3-phosphate dehydrogenase selectively binds AU-rich RNA in the NAD(+)-binding region (Rossmann fold).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2937035

Local activation of yeast ASH1 mRNA translation through phosphorylation of Khd1p by the casein kinase Yck1p.

2 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0012671

Sequence-specific binding of transfer RNA by glyceraldehyde-3-phosphate dehydrogenase

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20844764

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0012671

1 reference

260048

ADS bibcode

2010PLoSO...512671T

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260048

1 reference

1 reference

1 reference