Biological clocks and the coordination theory of RNA operons and regulons (Q37140994)

18 August 2017

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title

Biological clocks and the coordination theory of RNA operons and regulons (English)

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18 August 2017

J D Keene

1

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18 August 2017

1 January 2007

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Cold Spring Harbor Symposia on Quantitative Biology

18 August 2017

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18 August 2017

72

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18 August 2017

157-165

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Phosphorylation of HuR by Chk2 regulates SIRT1 expression

18 August 2017

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

ELAV tumor antigen, Hel-N1, increases translation of neurofilament M mRNA and induces formation of neurites in human teratocarcinoma cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Chromosomal organization: mingling with the neighbors

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Tumour-derived microvesicles carry several surface determinants and mRNA of tumour cells and transfer some of these determinants to monocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

MicroRNAs: genomics, biogenesis, mechanism, and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

BRF1 protein turnover and mRNA decay activity are regulated by protein kinase B at the same phosphorylation sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

21 January 2018

HuR and mRNA stability

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

A phosphorylated cytoplasmic autoantigen, GW182, associates with a unique population of human mRNAs within novel cytoplasmic speckles

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

The role of post-transcriptional regulation in chemokine gene expression in inflammation and allergy.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Selection of a subset of mRNAs from combinatorial 3' untranslated region libraries using neuronal RNA-binding protein Hel-N1

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Immediate early response of the circadian polyA ribonuclease nocturnin to two extracellular stimuli.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Genome-wide analysis of RNA-protein interactions illustrates specificity of the mRNA export machinery

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

A systems view of mRNP biology

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Ectopic expression of Hel-N1, an RNA-binding protein, increases glucose transporter (GLUT1) expression in 3T3-L1 adipocytes

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Why is Hu where? Shuttling of early-response-gene messenger RNA subsets

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Ribonucleoprotein infrastructure regulating the flow of genetic information between the genome and the proteome

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

RNA regulons: coordination of post-transcriptional events

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Post-transcriptional operons and regulons co-ordinating gene expression

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

RIP-Chip: the isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Drosophila CLOCK protein is under posttranscriptional control and influences light-induced activity.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

LARK activates posttranscriptional expression of an essential mammalian clock protein, PERIOD1.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Form follows function: The genomic organization of cellular differentiation

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Genomic regionality in rates of evolution is not explained by clustering of genes of comparable expression profile

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Hel-N1: an autoimmune RNA-binding protein with specificity for 3' uridylate-rich untranslated regions of growth factor mRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Prediction of mammalian microRNA targets

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Circadian control of messenger RNA stability. Association with a sequence-specific messenger RNA decay pathway.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Identification of a target RNA motif for RNA-binding protein HuR.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Cloning and characterization of HuR, a ubiquitously expressed Elav-like protein

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

An extensive network of coupling among gene expression machines

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Splicing of the period gene 3'-terminal intron is regulated by light, circadian clock factors, and phospholipase C.

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

RNA-binding protein HuR enhances p53 translation in response to ultraviolet light irradiation

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

From birth to death: the complex lives of eukaryotic mRNAs

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Synexpression groups in eukaryotes

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

A unified theory of gene expression

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Coordinated transcription of key pathways in the mouse by the circadian clock

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Embryonic stem cell-derived microvesicles reprogram hematopoietic progenitors: evidence for horizontal transfer of mRNA and protein delivery

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

The elav gene product of Drosophila, required in neurons, has three RNP consensus motifs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Is ectopic expression caused by deregulatory mutations or due to gene-regulation leaks with evolutionary potential?

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

The network of time: understanding the molecular circadian system

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

A conserved AU sequence from the 3' untranslated region of GM-CSF mRNA mediates selective mRNA degradation

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Evidence for large domains of similarly expressed genes in the Drosophila genome

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Functional cloning of BRF1, a regulator of ARE-dependent mRNA turnover

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Extensive and divergent circadian gene expression in liver and heart

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

HuD, a paraneoplastic encephalomyelitis antigen, contains RNA-binding domains and is homologous to Elav and Sex-lethal

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Genome-wide regulatory analysis using en masse nuclear run-ons emRUNs and ribonomic profiling with autoimmune sera

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Ribonomics: identifying mRNA subsets in mRNP complexes using antibodies to RNA-binding proteins and genomic arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Genome-wide analysis of mRNAs bound to the histone stem-loop binding protein

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Metabolic engineering in the -omics era: elucidating and modulating regulatory networks

21 January 2018

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https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

Bringing the role of mRNA decay in the control of gene expression into focus

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

21 January 2018

1 reference

https://api.crossref.org/works/10.1101%2FSQB.2007.72.013

21 January 2018

Identifiers

DOI

10.1101/SQB.2007.72.013

1 reference

18 August 2017

1 reference

PubMed ID

18419273