Microreact: visualizing and sharing data for genomic epidemiology and phylogeography (Q27966946)

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3 June 2020

Matthew Holden

8

1 reference

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3 June 2020

11

Brian G Spratt

1 reference

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3 June 2020

10

Hajo Grundmann

1 reference

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3 June 2020

author name string

Silvia Argimón

1

1 reference

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3 June 2020

Khalil Abudahab

2

1 reference

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3 June 2020

Richard J E Goater

3

1 reference

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3 June 2020

Artemij Fedosejev

4

1 reference

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3 June 2020

Corinna Glasner

6

1 reference

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3 June 2020

Edward J Feil

7

1 reference

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3 June 2020

Corin A Yeats

9

1 reference

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3 June 2020

David M Aanensen

12

1 reference

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3 June 2020

language of work or name

English

0 references

publication date

30 November 2016

0 references

2 references

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3 June 2020

volume

2

1 reference

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3 June 2020

issue

11

1 reference

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3 June 2020

page(s)

e000093

1 reference

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Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe

3 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

Zika virus in the Americas: Early epidemiological and genetic findings

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

Evolutionary genomics of epidemic visceral leishmaniasis in the Indian subcontinent

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

Real-time, portable genome sequencing for Ebola surveillance

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

The International Nucleotide Sequence Database Collaboration

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

A brief review of software tools for pangenomics

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

Cultural phylogeography of the Bantu Languages of sub-Saharan Africa

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

Real-time digital pathogen surveillance - the time is now.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

Coming of age: ten years of next-generation sequencing technologies

29 September 2017

1 reference

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Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection

29 September 2017

1 reference

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Biocuration of functional annotation at the European nucleotide archive.

29 September 2017

1 reference

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Population genomic datasets describing the post-vaccine evolutionary epidemiology of Streptococcus pneumoniae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

Roary: rapid large-scale prokaryote pan genome analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

Ten years of pan-genome analyses

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

The Y-chromosome tree bursts into leaf: 13,000 high-confidence SNPs covering the majority of known clades.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

Whole genome sequencing reveals potential spread of Clostridium difficile between humans and farm animals in the Netherlands, 2002 to 2011.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320705

Directional gene flow and ecological separation in Yersinia enterocolitica

29 September 2017

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28348833

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1099/MGEN.0.000093

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348833%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

1 reference

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3 June 2020

PubMed publication ID

28348833

1 reference