Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection (Q35924330)

11 August 2017

Whole genome resequencing of the human parasite Schistosoma mansoni reveals population history and effects of selection (English)

1 reference

11 August 2017

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whole genome sequencing

1 reference

Thomas Huckvale

5

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Thomas Crellen

Thomas Crellen

1

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Aidan Emery

Aidan M Emery

7

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James A. Cotton

James A Cotton

12

0 references

Matthew Berriman

10

Matthew Berriman

1 reference

11 August 2017

Joanne P Webster

11

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David Rollinson

8

David Rollinson

1 reference

11 August 2017

Fiona Allan

2

1 reference

11 August 2017

Sophia David

3

1 reference

11 August 2017

Caroline Durrant

4

1 reference

11 August 2017

Nancy Holroyd

6

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11 August 2017

David M Aanensen

9

1 reference

11 August 2017

language of work or name

English

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publication date

16 February 2016

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11 August 2017

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11 August 2017

6

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11 August 2017

20954

1 reference

Creative Commons Attribution 4.0 International

11 August 2017

start time

16 February 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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exact match

https://scigraph.springernature.com/pub.10.1038/srep20954

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cites work

Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Evolutionary insights into host-pathogen interactions from mammalian sequence data.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Paths to a malaria vaccine illuminated by parasite genomics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Genome-wide patterns of genetic polymorphism and signatures of selection in Plasmodium vivax

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Medicine. Halting harmful helminths.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Genome sequencing of chimpanzee malaria parasites reveals possible pathways of adaptation to human hosts.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

The global burden of disease study 2010: interpretation and implications for the neglected tropical diseases

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Natural selection and infectious disease in human populations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

2 October 2017

Human schistosomiasis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Pfam: the protein families database

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Genetic and Molecular Basis of Drug Resistance and Species-Specific Drug Action in Schistosome Parasites

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Large-scale gene function analysis with the PANTHER classification system

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

The branch-site test of positive selection is surprisingly robust but lacks power under synonymous substitution saturation and variation in GC

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Comparative study of transcriptome profiles of mechanical- and skin-transformed Schistosoma mansoni schistosomula

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

The genomes of four tapeworm species reveal adaptations to parasitism

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Population genetic structure of Schistosoma mansoni and Schistosoma haematobium from across six sub-Saharan African countries: implications for epidemiology, evolution and control

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Schistosomiasis collection at NHM (SCAN).

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

DNA 'barcoding' of Schistosoma mansoni across sub-Saharan Africa supports substantial within locality diversity and geographical separation of genotypes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Schistosoma mansoni venom allergen like proteins present differential allergic responses in a murine model of airway inflammation.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

The origin and antiquity of syphilis revisited: An Appraisal of Old World pre-Columbian evidence for treponemal infection

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Bayesian inference of ancient human demography from individual genome sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Inference of human population history from individual whole-genome sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Guns, germs and dogs: On the origin of Leishmania chagasi

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

A framework for variation discovery and genotyping using next-generation DNA sequencing data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Genetic consequences of mass human chemotherapy for Schistosoma mansoni: population structure pre- and post-praziquantel treatment in Tanzania

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Evolution of the mutation rate

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

The evolution of human genetic and phenotypic variation in Africa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Molecular epidemiology of Schistosoma mansoni in Uganda: DNA barcoding reveals substantial genetic diversity within Lake Albert and Lake Victoria populations.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

The genome of the blood fluke Schistosoma mansoni

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

The Sequence Alignment/Map format and SAMtools

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Northern hemisphere controls on tropical southeast African climate during the past 60,000 years

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Genome-wide detection and characterization of positive selection in human populations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Early human use of marine resources and pigment in South Africa during the Middle Pleistocene

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Spatial epidemiology of human schistosomiasis in Africa: risk models, transmission dynamics and control

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Origin and diversification of the human parasite Schistosoma mansoni

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Stratigraphic placement and age of modern humans from Kibish, Ethiopia

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Genealogical trees, coalescent theory and the analysis of genetic polymorphisms

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Cercarial elastase is encoded by a functionally conserved gene family across multiple species of schistosomes.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Schistosoma mansoni and Biomphalaria: past history and future trends

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Lake level fluctuations synchronize genetic divergences of cichlid fishes in African lakes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Early human occupation of the Red Sea coast of Eritrea during the last interglacial.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

PAML: a program package for phylogenetic analysis by maximum likelihood

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

A middle stone age worked bone industry from Katanda, Upper Semliki Valley, Zaire

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Prevalence of schistosome infections within molluscan populations: observed patterns and theoretical predictions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Inferring human population size and separation history from multiple genome sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Genetic Variation in Schistosoma Mansoni: Enzyme Polymorphisms in Populations from Africa, Southwest Asia, South America, and the West Indies *

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Molecular evidence linking hominid evolution to recent radiation of schistosomes (Platyhelminthes: Trematoda).

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Introgressive hybridization of human and rodent schistosome parasites in western Kenya.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

The French slave trade: an overview

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

On two Schistosomes of wild rodents of the Belgian Congo: Schistosoma rodhaini brumpt, 1931; and Schistosoma mansoni var. rodentorum schwetz, 1953; and their relationship to S. mansoni of man.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

First report of a natural hybrid between Schistosoma mansoni and S. rodhaini

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Dating and context of three middle stone age sites with bone points in the Upper Semliki Valley, Zaire

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4754680

Adaptive gene expression divergence inferred from population genomics

24 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP20954

Large-Scale Analyses of Positive Selection Using Codon Models

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP20954

Cytokine Interaction and Immune Responses during Schistosoma mansoni Infection

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FSREP20954

Whole-genome sequencing data offer insights into human demography

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26879532

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Molecular characterization of mitochondrial DNA provides evidence for the recent introduction of Schistosoma mansoni into America

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26879532

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/SREP20954

1 reference

Dimensions Publication ID

11 August 2017

0 references

1 reference

11 August 2017

1 reference