Recent Progress in Machine Learning-Based Methods for Protein Fold Recognition (Q28066913)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27999256%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

author name string

Quan Zou

series ordinal

2

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27999256%20AND%20SRC:MED&resulttype=core&format=json

International Journal of Molecular Sciences

8 June 2020

language of work or name

1 reference

16 December 2016

3 references

5 August 2020

8 April 2021

3 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27999256%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

5 August 2020

8 April 2021

17

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27999256%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

issue

12

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27999256%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution

8 June 2020

page(s)

2118

0 references

copyright license

2 references

5 August 2020

8 April 2021

0 references

SCOP2 prototype: a new approach to protein structure mining

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 March 2017

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I-TASSER: a unified platform for automated protein structure and function prediction

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

RaptorX: exploiting structure information for protein alignment by statistical inference

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

Critical assessment of methods of protein structure prediction-Round VII

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

Protein secondary structure prediction based on position-specific scoring matrices

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

SCOP: a structural classification of proteins database for the investigation of sequences and structures

20 March 2017

1 reference

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Identification of common molecular subsequences

20 March 2017

1 reference

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A method and server for predicting damaging missense mutations

20 March 2017

1 reference

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Comparative protein modelling by satisfaction of spatial restraints

20 March 2017

1 reference

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FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

Hierarchical classification of protein folds using a novel ensemble classifier

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

MutationTaster evaluates disease-causing potential of sequence alterations

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

The universal protein resource (UniProt)

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

ProFold: Protein Fold Classification with Additional Structural Features and a Novel Ensemble Classifier

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

The recognition of multi-class protein folds by adding average chemical shifts of secondary structure elements

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

Improving Protein Fold Recognition by Deep Learning Networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

Improving protein fold recognition with hybrid profiles combining sequence and structure evolution.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning

29 September 2017

1 reference

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CATH: comprehensive structural and functional annotations for genome sequences.

29 September 2017

1 reference

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Recognition of 27-class protein folds by adding the interaction of segments and motif information.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

RaptorX server: a resource for template-based protein structure modeling.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

FFAS-3D: improving fold recognition by including optimized structural features and template re-ranking

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

Transmembrane protein alignment and fold recognition based on predicted topology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

A feature extraction technique using bi-gram probabilities of position specific scoring matrix for protein fold recognition.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

FFAS server: novel features and applications

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

A new taxonomy-based protein fold recognition approach based on autocross-covariance transformation.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

Support Vector Machine-based classification of protein folds using the structural properties of amino acid residues and amino acid residue pairs.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

PFRES: protein fold classification by using evolutionary information and predicted secondary structure.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

The Protein Data Bank. A computer-based archival file for macromolecular structures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

Computational learning on specificity-determining residue-nucleotide interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5187918

Enhanced Protein Fold Prediction Method Through a Novel Feature Extraction Technique.

2 June 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

Probabilistic multi-class multi-kernel learning: on protein fold recognition and remote homology detection.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

Improving taxonomy-based protein fold recognition by using global and local features.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

Assessment of optimized Markov models in protein fold classification

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

Identifying Important Risk Factors for Survival in Kidney Graft Failure Patients Using Random Survival Forests

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

Rotation forest: A new classifier ensemble method.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

Multi-class protein fold recognition using support vector machines and neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

Improved method for predicting protein fold patterns with ensemble classifiers.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

Prediction of protein folds: extraction of new features, dimensionality reduction, and fusion of heterogeneous classifiers.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

Ensemble classifier for protein fold pattern recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

A novel hierarchical ensemble classifier for protein fold recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

Evidence theoretic protein fold classification based on the concept of hyperfold

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

Protein-protein binding sites prediction by 3D structural similarities.

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

Detecting protein conformational changes in interactions via scaling known structures

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

21 January 2018

1 reference

https://api.crossref.org/works/10.3390%2FIJMS17122118

Probabilistic models for capturing more physicochemical properties on protein-protein interface

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/27999256

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Predicting protein fold pattern with functional domain and sequential evolution information

1 reference

https://pubmed.ncbi.nlm.nih.gov/27999256

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3390/IJMS17122118

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27999256%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27999256%20AND%20SRC:MED&resulttype=core&format=json

8 June 2020

PubMed publication ID

2 references