Structure and organization of chromatin fiber in the nucleus (Q28080958)

Ping Zhu

series ordinal

2

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language of work or name

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7 October 2015

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589

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PubMed

issue

20 Pt A

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PubMed

page(s)

2893-904

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Chromatin Structure: A Repeating Unit of Histones and DNA

PubMed

cites work

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Crystal structure of the nucleosome core particle at 2.8 A resolution

21 January 2018

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Chromatin higher-order structures and gene regulation

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Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin

21 January 2018

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Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

21 January 2018

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Structure of the '30 nm' chromatin fibre: a key role for the linker histone

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Linker histone-dependent DNA structure in linear mononucleosomes.

21 January 2018

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Highly compacted chromatin formed in vitro reflects the dynamics of transcription activation in vivo

21 January 2018

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Solenoidal model for superstructure in chromatin

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Structure of chromatin and the linking number of DNA.

21 January 2018

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The higher-order structure of chromatin: evidence for a helical ribbon arrangement

21 January 2018

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Chromatin fibers are left-handed double helices with diameter and mass per unit length that depend on linker length.

21 January 2018

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Differences of supranucleosomal organization in different kinds of chromatin: cell type-specific globular subunits containing different numbers of nucleosomes

21 January 2018

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Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure

21 January 2018

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Nucleosome arrays reveal the two-start organization of the chromatin fiber

21 January 2018

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EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure

21 January 2018

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X-ray structure of a tetranucleosome and its implications for the chromatin fibre

21 January 2018

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Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions

21 January 2018

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Chromatin conformation in living cells: support for a zig-zag model of the 30 nm chromatin fiber

21 January 2018

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Nucleosome repeat length and linker histone stoichiometry determine chromatin fiber structure

21 January 2018

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Cryo-EM study of the chromatin fiber reveals a double helix twisted by tetranucleosomal units

21 January 2018

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Crystal structure of globular domain of histone H5 and its implications for nucleosome binding

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Histone H1 and its isoforms: contribution to chromatin structure and function

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The histone H1 family: specific members, specific functions?

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The structure of histone H1 and its location in chromatin

21 January 2018

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Single-base resolution mapping of H1-nucleosome interactions and 3D organization of the nucleosome

21 January 2018

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Nucleosomes, linker DNA, and linker histone form a unique structural motif that directs the higher-order folding and compaction of chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Where is the globular domain of linker histone located on the nucleosome?

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

The location of the linker histone on the nucleosome

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Complex of linker histone H5 with the nucleosome and its implications for chromatin packing

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Linker histone protects linker DNA on only one side of the core particle and in a sequence-dependent manner

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Preferential and asymmetric interaction of linker histones with 5S DNA in the nucleosome

21 January 2018

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Structural and functional features of a specific nucleosome containing a recognition element for the thyroid hormone receptor.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Self-association of linker histone H5 and of its globular domain: evidence for specific self-contacts

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Structural insights into the histone H1-nucleosome complex

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Position and orientation of the globular domain of linker histone H5 on the nucleosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

The role of the nucleosome acidic patch in modulating higher order chromatin structure

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

DNase I digestion reveals alternating asymmetrical protection of the nucleosome by the higher order chromatin structure

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Crystal structure of the PRC1 ubiquitylation module bound to the nucleosome

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Evidence for short-range helical order in the 30-nm chromatin fibers of erythrocyte nuclei

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Nucleosome Interactions and Stability in an Ordered Nucleosome Array Model System

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Histone Octamer Helical Tubes Suggest that an Internucleosomal Four-Helix Bundle Stabilizes the Chromatin Fiber

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

The shades of gray of the chromatin fiber: recent literature provides new insights into the structure of chromatin

21 January 2018

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A relationship between the helical twist of DNA and the ordered positioning of nucleosomes in all eukaryotic cells

21 January 2018

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Nucleosome shape dictates chromatin fiber structure

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

An all-atom model of the chromatin fiber containing linker histones reveals a versatile structure tuned by the nucleosomal repeat length

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Chromatin fiber polymorphism triggered by variations of DNA linker lengths

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Single-molecule force spectroscopy reveals a highly compliant helical folding for the 30-nm chromatin fiber

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Short nucleosome repeats impose rotational modulations on chromatin fibre folding

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Acetylation of histone H3 at the nucleosome dyad alters DNA-histone binding.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Crystal structure of the human centromeric nucleosome containing CENP-A

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Dissection of the unusual structural and functional properties of the variant H2A.Bbd nucleosome

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

SWI/SNF unwraps, slides, and rewraps the nucleosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Tetrameric structure of centromeric nucleosomes in interphase Drosophila cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Position effect variegation in Drosophila is associated with an altered chromatin structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

ACETYLATION AND METHYLATION OF HISTONES AND THEIR POSSIBLE ROLE IN THE REGULATION OF RNA SYNTHESIS

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Inhibition of 5S RNA transcription in vitro by nucleosome cores with low or high levels of histone acetylation

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

The effects of histone H4 tail acetylations on cation-induced chromatin folding and self-association.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

30 nm chromatin fibre decompaction requires both H4-K16 acetylation and linker histone eviction

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Histone H4-K16 acetylation controls chromatin structure and protein interactions

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

H3.3 actively marks enhancers and primes gene transcription via opening higher-ordered chromatin.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

The nucleosome surface regulates chromatin compaction and couples it with transcriptional repression

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Histone H2A C-terminus regulates chromatin dynamics, remodeling, and histone H1 binding

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Rearrangement of the histone H2A C-terminal domain in the nucleosome

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Citrullination regulates pluripotency and histone H1 binding to chromatin

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Role of charge neutralization in the folding of the carboxy-terminal domain of histone H1.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Phosphorylation of the carboxy-terminal domain of histone H1: effects on secondary structure and DNA condensation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Isoform-specific phosphorylation of human linker histone H1.4 in mitosis by the kinase Aurora B.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Architecture of the high mobility group nucleosomal protein 2-nucleosome complex as revealed by methyl-based NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

A charged and contoured surface on the nucleosome regulates chromatin compaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Structural Basis of Silencing: Sir3 BAH Domain in Complex with a Nucleosome at 3.0 A Resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Structure of RCC1 chromatin factor bound to the nucleosome core particle

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Nα-acetylated Sir3 stabilizes the conformation of a nucleosome-binding loop in the BAH domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Ezh1 and Ezh2 maintain repressive chromatin through different mechanisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

MENT, a heterochromatin protein that mediates higher order chromatin folding, is a new serpin family member

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Chromatin compaction by human MeCP2. Assembly of novel secondary chromatin structures in the absence of DNA methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

L3MBTL1, a histone-methylation-dependent chromatin lock

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Human heterochromatin protein 1α promotes nucleosome associations that drive chromatin condensation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Chromodomain-mediated oligomerization of HP1 suggests a nucleosome-bridging mechanism for heterochromatin assembly.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Structural insights into Rhino-mediated germline piRNA cluster formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Analysis of cryo-electron microscopy images does not support the existence of 30-nm chromatin fibers in mitotic chromosomes in situ

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Living without 30nm chromatin fibers

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Chromatin fibers observed in situ in frozen hydrated sections. Native fiber diameter is not correlated with nucleosome repeat length

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

The three-dimensional architecture of chromatin in situ: electron tomography reveals fibers composed of a continuously variable zig-zag nucleosomal ribbon

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Automated electron microscope tomography of frozen-hydrated chromatin: the irregular three-dimensional zigzag architecture persists in compact, isolated fibers

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Nucleosomes stacked with aligned dyad axes are found in native compact chromatin in vitro

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Low angle x-ray diffraction studies of chromatin structure in vivo and in isolated nuclei and metaphase chromosomes

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

In vivo chromatin organization of mouse rod photoreceptors correlates with histone modifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

The superstructure of chromatin and its condensation mechanism. I. Synchrotron radiation X-ray scattering results

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Radial density distribution of chromatin: evidence that chromatin fibers have solid centers

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Histone H1 is located in the interior of the chromatin 30-nm filament.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Chromatin superstructure: The next level of structure above the nucleosome has an alternating character. A two-nucleosome based series is generated by probes armed with DNAase-I acting on isolated nuclei

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Chromatin as dynamic 10-nm fibers

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Constitutive heterochromatin reorganization during somatic cell reprogramming

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Chromatin structure revealed by X-ray scattering analysis and computational modeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Chromatin in a marine picoeukaryote is a disordered assemblage of nucleosomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Elucidating chromatin and nuclear domain architecture with electron spectroscopic imaging

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Open and closed domains in the mouse genome are configured as 10-nm chromatin fibres

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

How cryo-EM is revolutionizing structural biology

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

Quantitatively imaging chromosomes by correlated cryo-fluorescence and soft x-ray tomographies

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.04.023

10.1016/J.FEBSLET.2015.04.023

21 January 2018

Identifiers

DOI

1 reference

Consolidated OpenCitations Corpus – April 2017

1 reference

Consolidated OpenCitations Corpus – April 2017

PubMed publication ID

25913782

1 reference

Consolidated OpenCitations Corpus – April 2017