Structural and functional diversity of Topologically Associating Domains (Q28088652)

Crossref

language of work or name

1 reference

7 October 2015

1 reference

1 reference

589

1 reference

PubMed

issue

20 Pt A

1 reference

PubMed

page(s)

2877-84

1 reference

Chromatin loops as allosteric modulators of enhancer-promoter interactions

PubMed

cites work

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The accessible chromatin landscape of the human genome

20 March 2017

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Chromosome territories, nuclear architecture and gene regulation in mammalian cells

20 March 2017

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Comprehensive mapping of long-range interactions reveals folding principles of the human genome

20 March 2017

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Looping and interaction between hypersensitive sites in the active beta-globin locus

20 March 2017

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Capturing chromosome conformation

20 March 2017

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Control of cell identity genes occurs in insulated neighborhoods in mammalian chromosomes

20 March 2017

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Topological domains in mammalian genomes identified by analysis of chromatin interactions

20 March 2017

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A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

20 March 2017

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The long-range interaction landscape of gene promoters

7 April 2017

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A map of the cis-regulatory sequences in the mouse genome

7 April 2017

1 reference

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Spatial partitioning of the regulatory landscape of the X-inactivation centre

7 April 2017

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Bipartite structure of the inactive mouse X chromosome

7 April 2017

1 reference

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Chromosomes. A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation

29 September 2017

1 reference

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Condensin-driven remodelling of X chromosome topology during dosage compensation.

29 September 2017

1 reference

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Architectural proteins, transcription, and the three-dimensional organization of the genome

29 September 2017

1 reference

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Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions

29 September 2017

1 reference

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Widespread rearrangement of 3D chromatin organization underlies polycomb-mediated stress-induced silencing

29 September 2017

1 reference

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The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements.

29 September 2017

1 reference

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Topologically associating domains are stable units of replication-timing regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Mapping the Shh long-range regulatory domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Genome-wide Hi-C analyses in wild-type and mutants reveal high-resolution chromatin interactions in Arabidopsis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

A single oncogenic enhancer rearrangement causes concomitant EVI1 and GATA2 deregulation in leukemia

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Cohesin and CTCF differentially affect chromatin architecture and gene expression in human cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Organization of the mitotic chromosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

High-resolution mapping of the spatial organization of a bacterial chromosome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Topology of mammalian developmental enhancers and their regulatory landscapes

29 September 2017

1 reference

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A high-resolution map of the three-dimensional chromatin interactome in human cells

29 September 2017

1 reference

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Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments

29 September 2017

1 reference

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The spatial organization of the human genome

29 September 2017

1 reference

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Segmental folding of chromosomes: a basis for structural and regulatory chromosomal neighborhoods?

29 September 2017

1 reference

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Architectural protein subclasses shape 3D organization of genomes during lineage commitment

29 September 2017

1 reference

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Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data

29 September 2017

1 reference

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The hierarchy of the 3D genome

29 September 2017

1 reference

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Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

MORC family ATPases required for heterochromatin condensation and gene silencing.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Three-dimensional folding and functional organization principles of the Drosophila genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

The inactive X chromosome adopts a unique three-dimensional conformation that is dependent on Xist RNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Functional nuclear organization of transcription and DNA replication: a topographical marriage between chromatin domains and the interchromatin compartment.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Caenorhabditis elegans chromosome arms are anchored to the nuclear membrane via discontinuous association with LEM-2

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Systematic protein location mapping reveals five principal chromatin types in Drosophila cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

29 September 2017

Chromosome territories

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Cis-ruption mechanisms: disruption of cis-regulatory control as a cause of human genetic disease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Cohesins form chromosomal cis-interactions at the developmentally regulated IFNG locus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

A condensin-like dosage compensation complex acts at a distance to control expression throughout the genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Gene regulation through nuclear organization.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Long-range chromosomal interactions regulate the timing of the transition between poised and active gene expression

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Long-range control of gene expression: emerging mechanisms and disruption in disease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Comparative Hi-C reveals that CTCF underlies evolution of chromosomal domain architecture

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Spatial genome organization: contrasting views from chromosome conformation capture and fluorescence in situ hybridization

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Functional and topological characteristics of mammalian regulatory domains.

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

Cohesin-mediated interactions organize chromosomal domain architecture

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

The beta-globin nuclear compartment in development and erythroid differentiation

2 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.08.044

Hi-C analysis in Arabidopsis identifies the KNOT, a structure with similarities to the flamenco locus of Drosophila.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2015.08.044

Enhancer loops appear stable during development and are associated with paused polymerase.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4598308

10.1016/J.FEBSLET.2015.08.044

27 November 2018

Identifiers

DOI

1 reference

1 reference

1 reference

PubMed publication ID

26348399

1 reference