The multiple-specificity landscape of modular peptide recognition domains (Q28115307)

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author name string

Frank Butty

2

1 reference

3 January 2017

Marta Wierzbicka

3

1 reference

3 January 2017

Erik Verschueren

4

1 reference

3 January 2017

Peter Vanhee

5

1 reference

3 January 2017

Haiming Huang

6

1 reference

3 January 2017

Nisa Dar

8

1 reference

3 January 2017

Igor Stagljar

9

1 reference

3 January 2017

Luis Serrano

10

1 reference

3 January 2017

Sachdev S. Sidhu

11

1 reference

3 January 2017

Gary D. Bader

12

1 reference

3 January 2017

Philip M. Kim

Molecular Systems Biology

13

1 reference

3 January 2017

26 April 2011

1 reference

3 January 2017

1 reference

3 January 2017

7

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3 January 2017

484

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3 January 2017

Regulation of epidermal growth factor receptor trafficking by lysine deacetylase HDAC6

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

The FoldX web server: an online force field

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

MUSCLE: multiple sequence alignment with high accuracy and high throughput

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

In vitro selection and evolution of functional proteins by using ribosome display

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

ELM: the status of the 2010 eukaryotic linear motif resource

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Internal recognition through PDZ domain plasticity in the Par-6-Pals1 complex

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Unexpected modes of PDZ domain scaffolding revealed by structure of nNOS-syntrophin complex

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Structure of PICK1 and other PDZ domains obtained with the help of self-binding C-terminal extensions

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Structure of the first PDZ domain of human PSD-93

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Unusual binding interactions in PDZ domain crystal structures help explain binding mechanisms

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

The Plastic Energy Landscape of Protein Folding: A TRIANGULAR FOLDING MECHANISM WITH AN EQUILIBRIUM INTERMEDIATE FOR A SMALL PROTEIN DOMAIN

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Two binding orientations for peptides to the Src SH3 domain: development of a general model for SH3-ligand interactions

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Structural determinants of peptide-binding orientation and of sequence specificity in SH3 domains

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Crystal structures of a complexed and peptide-free membrane protein-binding domain: molecular basis of peptide recognition by PDZ

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Assembly of Cell Regulatory Systems Through Protein Interaction Domains

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Mechanism and role of PDZ domains in signaling complex assembly

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Predicting subcellular localization of proteins based on their N-terminal amino acid sequence

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Sequence and structure-based prediction of eukaryotic protein phosphorylation sites

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Interaction of nitric oxide synthase with the postsynaptic density protein PSD-95 and alpha1-syntrophin mediated by PDZ domains

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

The IntAct molecular interaction database in 2010

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Diversity and complexity in DNA recognition by transcription factors

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

SH3 domains: complexity in moderation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Linear Motif Atlas for Phosphorylation-Dependent Signaling

7 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.18

A regression framework incorporating quantitative and negative interaction data improves quantitative prediction of PDZ domain-peptide interaction from primary sequence.

22 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Proteome scanning to predict PDZ domain interactions using support vector machines

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

High-resolution mapping of protein sequence-function relationships

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Detecting interactions with membrane proteins using a membrane two-hybrid assay in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

A specificity map for the PDZ domain family

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

A feature-based approach to modeling protein-DNA interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Predicting PDZ domain-peptide interactions from primary sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Signaling by the cysteinyl-leukotriene receptor 2. Involvement in chemokine gene transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Innovation and robustness in complex regulatory gene networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

PDZ domain binding selectivity is optimized across the mouse proteome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

A GABAergic system in airway epithelium is essential for mucus overproduction in asthma

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Identifying specificity profiles for peptide recognition modules from phage-displayed peptide libraries

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

A rapid method for determining protein kinase phosphorylation specificity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

PDZBase: a protein-protein interaction database for PDZ-domains

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Quantification of PDZ domain specificity, prediction of ligand affinity and rational design of super-binding peptides

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

A map of WW domain family interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Machine learning approaches for the prediction of signal peptides and other protein sorting signals

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3097085

Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network.

29 September 2017

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.18

DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.18

Enhanced position weight matrices using mixture models

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.18

Hidden Markov model-based prediction of antigenic peptides that interact with MHC class II molecules.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.18

Association of SLC6A12 variants with aspirin-intolerant asthma in a Korean population

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.18

Structure-based prediction of the peptide sequence space recognized by natural and synthetic PDZ domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.18

Protein-protein docking with backbone flexibility.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.18

Coevolution of PDZ domain-ligand interactions analyzed by high-throughput phage display and deep sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.18

Comparison of prokaryotic diversity at offshore oceanic locations reveals a different microbiota in the Mediterranean Sea

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2011.18

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Identifiers

DOI

10.1038/MSB.2011.18

1 reference

1597484

Internet Archive ID

pubmed-PMC3097085

0 references

1597484

1 reference

1 reference

1 reference