AlgaGEM--a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome (Q28260720)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369158%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

title

AlgaGEM--a genome-scale metabolic reconstruction of algae based on the Chlamydomonas reinhardtii genome (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369158%20AND%20SRC:MED&resulttype=core&format=json

Chlamydomonas reinhardtii

24 January 2020

main subject

1 reference

inferred from title

author

Robin William Palfreyman

series ordinal

3

1 reference

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24 January 2020

Lars K. Nielsen

series ordinal

4

1 reference

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24 January 2020

2

Lake-Ee Quek

1 reference

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24 January 2020

author name string

Cristiana Gomes de Oliveira Dal'Molin

series ordinal

1

1 reference

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24 January 2020

language of work or name

English

0 references

publication date

22 December 2011

1 reference

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24 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369158%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

volume

12 Suppl 4

1 reference

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24 January 2020

issue

Suppl 4

0 references

page(s)

S5

1 reference

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AraGEM, a genome-scale reconstruction of the primary metabolic network in Arabidopsis

24 January 2020

cites work

1 reference

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KEGG for representation and analysis of molecular networks involving diseases and drugs

20 March 2017

1 reference

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FERMENTATIVE AND PHOTOCHEMICAL PRODUCTION OF HYDROGEN IN ALGAE

20 March 2017

1 reference

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PMRD: plant microRNA database

20 March 2017

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KEGG for linking genomes to life and the environment

20 March 2017

1 reference

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WoLF PSORT: protein localization predictor

20 March 2017

1 reference

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Eukaryotic Fe-hydrogenases -- old eukaryotic heritage or adaptive acquisitions?

20 March 2017

1 reference

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Hydrogen production. Green algae as a source of energy

20 March 2017

1 reference

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Hydrogen production in Chlamydomonas: photosystem II-dependent and -independent pathways differ in their requirement for starch metabolism

20 March 2017

1 reference

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Optimization of metabolic capacity and flux through environmental cues to maximize hydrogen production by the cyanobacterium "Arthrospira (Spirulina) maxima"

20 March 2017

1 reference

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Probing green algal hydrogen production

20 March 2017

1 reference

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Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

20 March 2017

1 reference

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Metabolic systems analysis to advance algal biotechnology

7 April 2017

1 reference

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Microalgal hydrogen production

29 September 2017

1 reference

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Biodiesel from algae: challenges and prospects

29 September 2017

1 reference

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In silico identification of gene amplification targets for improvement of lycopene production

29 September 2017

1 reference

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Toward design-based engineering of industrial microbes

29 September 2017

1 reference

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Flux Design: In silico design of cell factories based on correlation of pathway fluxes to desired properties

29 September 2017

1 reference

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Metabolic network analysis integrated with transcript verification for sequenced genomes.

29 September 2017

1 reference

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Constraints-based genome-scale metabolic simulation for systems metabolic engineering

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287588

ChlamyCyc: an integrative systems biology database and web-portal for Chlamydomonas reinhardtii

29 September 2017

1 reference

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Flux balance analysis of primary metabolism in Chlamydomonas reinhardtii

29 September 2017

1 reference

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Photobiological hydrogen-producing systems

29 September 2017

1 reference

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Opportunities for renewable bioenergy using microorganisms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287588

Photosynthetic H2 metabolism in Chlamydomonas reinhardtii (unicellular green algae).

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287588

Functional integration of the HUP1 hexose symporter gene into the genome of C. reinhardtii: Impacts on biological H(2) production

29 September 2017

1 reference

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Hydrogenases and hydrogen photoproduction in oxygenic photosynthetic organisms.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287588

Improved photobiological H2 production in engineered green algal cells

29 September 2017

1 reference

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Reconstruction and validation of Saccharomyces cerevisiae iND750, a fully compartmentalized genome-scale metabolic model

29 September 2017

1 reference

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MetaCyc: a multiorganism database of metabolic pathways and enzymes.

29 September 2017

1 reference

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Hydrogenases and hydrogen metabolism of cyanobacteria

29 September 2017

1 reference

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Differential regulation of the Fe-hydrogenase during anaerobic adaptation in the green alga Chlamydomonas reinhardtii

29 September 2017

1 reference

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Predicting metabolic engineering knockout strategies for chemical production: accounting for competing pathways

29 September 2017

1 reference

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Characterization of the key step for light-driven hydrogen evolution in green algae

2 June 2018

1 reference

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Biochemical and physiological characterization of the pyruvate formate-lyase Pfl1 of Chlamydomonas reinhardtii, a typically bacterial enzyme in a eukaryotic alga

2 June 2018

1 reference

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The promise and challenges of microalgal-derived biofuels

2 June 2018

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Flux balance analysis of biological systems: applications and challenges.

21 January 2018

1 reference

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A genome-scale, constraint-based approach to systems biology of human metabolism

21 January 2018

1 reference

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C4GEM, a genome-scale metabolic model to study C4 plant metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-S4-S5

Functional analysis and regulation of the malate synthase from Chlamydomonas reinhardtii.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-S4-S5

Cytochemical localization of glycolate dehydrogenase in mitochondria of chlamydomonas.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-S4-S5

Hydrogen production by photoautotrophic sulfur-deprived Chlamydomonas reinhardtii pre-grown and incubated under high light.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-S4-S5

Expression of two [Fe]-hydrogenases in Chlamydomonas reinhardtii under anaerobic conditions

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-S4-S5

Genomics of green algal hydrogen research

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-S4-S5

Biochemical and morphological characterization of sulfur-deprived and H2-producing Chlamydomonas reinhardtii (green alga).

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-S4-S5

On the reconstruction of the Mus musculus genome-scale metabolic network model.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287588

Hydrogen production by Chlamydomonas reinhardtii: an elaborate interplay of electron sources and sinks.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287588

Limitations on the Utilization of Glycolate by Chlamydomonas reinhardtii

27 November 2018

1 reference

12 December 2020

The CO2-concentrating mechanism in the physiological context: lowering the CO2 supply diminishes culture growth and economises starch utilisation in Chlamydomonas reinhardtii

1 reference

12 December 2020

Glycolate Metabolism and Excretion by Chlamydomonas reinhardtii

1 reference

12 December 2020

Glycolate dehydrogenase in green algae

1 reference

12 December 2020

10.1186/1471-2164-12-S4-S5

Identifiers

DOI

2 references

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1817478

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369158%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

24 January 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-s4-s5

OpenCitations bibliographic resource ID

1817478

1 reference

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369158%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

PubMed publication ID

22369158

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:22369158%20AND%20SRC:MED&resulttype=core&format=json