Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments (Q28286406)

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English	Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments	scientific article

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scholarly article

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Using ProtMAX to create high-mass-accuracy precursor alignments from label-free quantitative mass spectrometry data generated in shotgun proteomics experiments (English)

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Shotgun proteomics

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Volker Egelhofer

object named as

Volker Egelhofer

1

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Wolfgang Hoehenwarter

object named as

Wolfgang Hoehenwarter

2

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object named as

David Lyon

3

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Stefanie Wienkoop

object named as

Stefanie Wienkoop

5

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Wolfram Weckwerth

4

object named as

Wolfram Weckwerth

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language of work or name

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publication date

March 2013

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Nature Protocols

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8

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3

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595-601

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Global quantification of mammalian gene expression control

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https://api.crossref.org/works/10.1038/NPROT.2013.013

21 April 2017

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

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https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 April 2017

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 April 2017

Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 April 2017

More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.

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https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Quantitation in mass-spectrometry-based proteomics

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

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https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

A high-quality catalog of the Drosophila melanogaster proteome

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https://api.crossref.org/works/10.1038%2FNPROT.2013.013

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Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

1 reference

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21 January 2018

Stable isotope labeling by amino acids in cell culture (SILAC) and proteome quantitation of mouse embryonic stem cells to a depth of 5,111 proteins

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Deep proteome and transcriptome mapping of a human cancer cell line

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Statistical similarities between transcriptomics and quantitative shotgun proteomics data

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

A rapid approach for phenotype-screening and database independent detection of cSNP/protein polymorphism using mass accuracy precursor alignment.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

MAPA distinguishes genotype-specific variability of highly similar regulatory protein isoforms in potato tuber.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Genetic analysis of pathway regulation for enhancing branched-chain amino acid biosynthesis in plants.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

21 January 2018

Granger causality in integrated GC-MS and LC-MS metabolomics data reveals the interface of primary and secondary metabolism.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

31 March 2020

Phytochemical composition of Potentilla anserina L. analyzed by an integrative GC-MS and LC-MS metabolomics platform.

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

31 March 2020

24-hour lock mass protection

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

31 March 2020

Sample extraction techniques for enhanced proteomic analysis of plant tissues

1 reference

https://api.crossref.org/works/10.1038%2FNPROT.2013.013

31 March 2020

Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment

1 reference

https://pubmed.ncbi.nlm.nih.gov/23449253

12 December 2020

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