Statistical similarities between transcriptomics and quantitative shotgun proteomics data (Q31137321)

29 June 2017

Statistical similarities between transcriptomics and quantitative shotgun proteomics data (English)

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29 June 2017

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6

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29 June 2017

Norman Pavelka

1

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Mattia Pelizzola

Mattia Pelizzola

4

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Michael P. Washburn

Michael P Washburn

7

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Selene K Swanson

3

Selene K Swanson

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29 June 2017

2

Marjorie L Fournier

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PubMed ID

18029349

Paola Ricciardi-Castagnoli

29 June 2017

5

Paola Ricciardi-Castagnoli

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29 June 2017

19 November 2007

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Molecular & Cellular Proteomics

29 June 2017

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29 June 2017

7

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29 June 2017

631-644

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29 June 2017

4

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Integrated genomic and proteomic analyses of a systematically perturbed metabolic network

29 June 2017

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Systems biology: a brief overview

21 January 2018

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Collecting and organizing systematic sets of protein data

21 January 2018

1 reference

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High density synthetic oligonucleotide arrays

21 January 2018

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A high-resolution map of transcription in the yeast genome

21 January 2018

1 reference

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Large-scale analysis of the yeast proteome by multidimensional protein identification technology

21 January 2018

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Mass spectrometry-based proteomics

21 January 2018

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Reverse engineering of biological complexity

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Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

21 January 2018

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Functional discovery via a compendium of expression profiles

21 January 2018

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Inducible IL-2 production by dendritic cells revealed by global gene expression analysis.

21 January 2018

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A proteomic view of the Plasmodium falciparum life cycle

21 January 2018

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Statistical and computational methods for comparative proteomic profiling using liquid chromatography-tandem mass spectrometry

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RNA amplification for successful gene profiling analysis.

21 January 2018

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Testing for differentially-expressed genes by maximum-likelihood analysis of microarray data

21 January 2018

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Identifying differentially expressed genes in cDNA microarray experiments.

21 January 2018

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Significance analysis of microarrays applied to the ionizing radiation response

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A power law global error model for the identification of differentially expressed genes in microarray data

21 January 2018

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Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

21 January 2018

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Advances in quantitative proteomics via stable isotope tagging and mass spectrometry

21 January 2018

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A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 January 2018

1 reference

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Comparison of label-free methods for quantifying human proteins by shotgun proteomics.

21 January 2018

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Detecting differential and correlated protein expression in label-free shotgun proteomics

21 January 2018

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Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors

21 January 2018

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A model for measurement error for gene expression arrays

21 January 2018

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Locating probable genes using Fourier transform approach.

21 January 2018

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A random variance model for detection of differential gene expression in small microarray experiments.

21 January 2018

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Bioconductor: open software development for computational biology and bioinformatics

21 January 2018

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AMDA: an R package for the automated microarray data analysis

21 January 2018

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Effects of dexamethazone on LPS-induced activationand migration of mouse dendritic cells revealed by a genome-wide transcriptional analysis

21 January 2018

1 reference

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RB acute loss induces centrosome amplification and aneuploidy in murine primary fibroblasts.

21 January 2018

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Quantifying reproducibility for differential proteomics: noise analysis for protein liquid chromatography-mass spectrometry of human serum.

21 January 2018

1 reference

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Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

21 January 2018

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A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology

21 January 2018

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

21 January 2018

1 reference

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DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

21 January 2018

1 reference

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Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors

21 January 2018

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Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations

21 January 2018

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A type I IFN-dependent pathway induced by Schistosoma mansoni eggs in mouse myeloid dendritic cells generates an inflammatory signature

21 January 2018

1 reference

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Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

21 January 2018

1 reference

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R: A Language for Data Analysis and Graphics

21 January 2018

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A Bayesian framework for the analysis of microarray expression data: regularized t -test and statistical inferences of gene changes

21 January 2018

1 reference

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Making sense of microarray data distributions

21 January 2018

1 reference

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BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments.

21 January 2018

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Protein synthesis in long-term stationary-phase cultures of Saccharomyces cerevisiae

21 January 2018

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Collateral missing value imputation: a new robust missing value estimation algorithm for microarray data

21 January 2018

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Missing value estimation for DNA microarray gene expression data: local least squares imputation

21 January 2018

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Missing value estimation methods for DNA microarrays

21 January 2018

1 reference

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Statistical significance for genomewide studies

21 January 2018

1 reference

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Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

21 January 2018

1 reference

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10.1074/MCP.M700240-MCP200

21 January 2018

Identifiers

DOI

1 reference

29 June 2017

1 reference

PubMed ID

18029349