BiologicalNetworks--tools enabling the integration of multi-scale data for the host-pathogen studies (Q28476821)

Mayya Sedova

2

0 references

Animesh Ray

Animesh Ray

5

0 references

Amarnath Gupta

4

Amarnath Gupta

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author name string

Sergey Kozhenkov

1

0 references

Yulia Dubinina

3

0 references

Michael Baitaluk

describes a project that uses

7

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language of work or name

English

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publication date

14 January 2011

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published in

BMC Systems Biology

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volume

5

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issue

1

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page(s)

7

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Cytoscape

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Evolutionarily conserved herpesviral protein interaction networks

19 March 2017

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A Functional Genomic Screen Identifies Cellular Cofactors of Hepatitis C Virus Replication

19 March 2017

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The Nrf2-antioxidant response element signaling pathway and its activation by oxidative stress

19 March 2017

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Identification of host proteins required for HIV infection through a functional genomic screen

19 March 2017

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PHI-base update: additions to the pathogen host interaction database

19 March 2017

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CAMERA: a community resource for metagenomics

19 March 2017

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Graph-based analysis and visualization of experimental results with ONDEX

19 March 2017

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19 March 2017

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STRING: known and predicted protein-protein associations, integrated and transferred across organisms

19 March 2017

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A strategy for cancer prevention: stimulation of the Nrf2-ARE signaling pathway

19 March 2017

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

19 March 2017

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

19 March 2017

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Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE

19 March 2017

1 reference

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Biochemistry and molecular cell biology of diabetic complications

19 March 2017

1 reference

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Antiviral actions of interferons

19 March 2017

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LAT: the ZAP-70 tyrosine kinase substrate that links T cell receptor to cellular activation

19 March 2017

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19 March 2017

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Database resources of the National Center for Biotechnology Information

7 April 2017

1 reference

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Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication

7 April 2017

1 reference

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RNA interference screen for human genes associated with West Nile virus infection

7 April 2017

1 reference

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Strategies for mitigating an influenza pandemic

7 April 2017

1 reference

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Discovering regulatory and signalling circuits in molecular interaction networks

7 April 2017

1 reference

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In vitro and in vivo characterization of new swine-origin H1N1 influenza viruses

7 April 2017

1 reference

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Transmission and pathogenesis of swine-origin 2009 A(H1N1) influenza viruses in ferrets and mice

7 April 2017

1 reference

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Emergence and pandemic potential of swine-origin H1N1 influenza virus

7 April 2017

1 reference

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A statistical phylogeography of influenza A H5N1.

7 April 2017

1 reference

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Semantic integration of data on transcriptional regulation

9 May 2017

1 reference

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Novel H1N1-associated rhabdomyolysis leading to acute renal failure.

29 September 2017

1 reference

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Pediatric influenza-associated myositis - Nebraska, 2001-2007.

29 September 2017

1 reference

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Understanding influenza backward

29 September 2017

1 reference

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Interim analysis of pandemic influenza (H1N1) 2009 in Australia: surveillance trends, age of infection and effectiveness of seasonal vaccination.

29 September 2017

1 reference

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Pathogenesis and transmission of swine-origin 2009 A(H1N1) influenza virus in ferrets.

29 September 2017

1 reference

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Host cell factors in HIV replication: meta-analysis of genome-wide studies

29 September 2017

1 reference

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BioMart Central Portal--unified access to biological data

29 September 2017

1 reference

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Discovery of insect and human dengue virus host factors

29 September 2017

1 reference

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PIG--the pathogen interaction gateway.

29 September 2017

1 reference

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Role for beta-catenin and HOX transcription factors in Caenorhabditis elegans and mammalian host epithelial-pathogen interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

Drosophila RNAi screen identifies host genes important for influenza virus replication

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

The influenza virus resource at the National Center for Biotechnology Information

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

BNDB - the Biochemical Network Database

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

PHIDIAS: a pathogen-host interaction data integration and analysis system

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

GenMAPP 2: new features and resources for pathway analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

Characterization of low-pathogenic H5 subtype influenza viruses from Eurasia: implications for the origin of highly pathogenic H5N1 viruses

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

Integrating large-scale genotype and phenotype data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

The Life Sciences Semantic Web is full of creeps!

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

BiologicalNetworks: visualization and analysis tool for systems biology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

Global patterns of influenza a virus in wild birds

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

BIOZON: a system for unification, management and analysis of heterogeneous biological data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

A systematic model to predict transcriptional regulatory mechanisms based on overrepresentation of transcription factor binding profiles.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

Infectious disease: can we avert a lethal flu pandemic?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

Induction and regulation of IFNs during viral infections

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

An integrated systems analysis implicates EGR1 downregulation in simian immunodeficiency virus encephalitis-induced neural dysfunction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

Life-threatening respiratory failure from H1N1 influenza 09 (human swine influenza).

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

Intensive-care patients with severe novel influenza A (H1N1) virus infection - Michigan, June 2009.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

TRELLIS+: an effective approach for indexing genome-scale sequences using suffix trees

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3027118

Genome-scale RNAi screen for host factors required for HIV replication

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21235794

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Inferring protein interactions from phylogenetic distance matrices

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21235794

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1752-0509-5-7

0 references

DBLP publication ID

journals/bmcsb/KozhenkovSDGRPB11

1 reference

DBLP Dataset 2021-01-02