Multi-scale stochastic simulation of diffusion-coupled agents and its application to cell culture simulation (Q28478532)

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19 January 2020

title

Multi-scale stochastic simulation of diffusion-coupled agents and its application to cell culture simulation (English)

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4

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19 January 2020

author name string

Yishai Shimoni

series ordinal

1

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19 January 2020

German Nudelman

series ordinal

2

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19 January 2020

Fernand Hayot

series ordinal

3

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19 January 2020

language of work or name

English

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publication date

21 December 2011

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19 January 2020

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volume

6

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issue

12

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19 January 2020

page(s)

e29298

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Creative Commons Attribution 4.0 International

19 January 2020

copyright license

start time

21 December 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Reaction factoring and bipartite update graphs accelerate the Gillespie Algorithm for large-scale biochemical systems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

A constant-time kinetic Monte Carlo algorithm for simulation of large biochemical reaction networks

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Innate immune recognition of viral infection

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Precise temporal modulation in the response of the SOS DNA repair network in individual bacteria

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Stochastic gene expression in a single cell

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Immunobiology of dendritic cells

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Stochasticity in gene expression: from theories to phenotypes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

The biochemical basis of an all-or-none cell fate switch in Xenopus oocytes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Role of cell-to-cell variability in activating a positive feedback antiviral response in human dendritic cells

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Power-laws in interferon-B mRNA distribution in virus-infected dendritic cells.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Stochastic analysis of the SOS response in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Hybrid stochastic simulations of intracellular reaction-diffusion systems

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Interferon-beta pretreatment of conventional and plasmacytoid human dendritic cells enhances their activation by influenza virus

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Kinetic Monte Carlo method for rule-based modeling of biochemical networks.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Time and length scales of autocrine signals in three dimensions.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Chromosome-specific and noisy IFNB1 transcription in individual virus-infected human primary dendritic cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Dendritic cells in a mature age.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Stochastic reaction-diffusion simulation with MesoRD.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3244460

Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels

29 September 2017

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0029298

A modified next reaction method for simulating chemical systems with time dependent propensities and delays.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0029298

Hybrid simulations of stochastic reaction-diffusion processes for modeling intracellular signaling pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0029298

Binomial tau-leap spatial stochastic simulation algorithm for applications in chemical kinetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0029298

Accurate implementation of leaping in space: the spatial partitioned-leaping algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0029298

Exact stochastic simulation of coupled chemical reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0029298

The chemical Langevin equation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0029298

Stochastic chemical kinetics and the quasi-steady-state assumption: Application to the Gillespie algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0029298

10.1371/JOURNAL.PONE.0029298

21 January 2018

Identifiers

DOI

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19 January 2020

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