A genetic assay for transcription errors reveals multilayer control of RNA polymerase II fidelity (Q28543050)

2

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2 June 2020

author name string

Jordan D Irvin

1

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2 June 2020

Deanna R Gotte

3

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2 June 2020

Brenda K Shafer

4

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2 June 2020

Ingold Huang

5

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2 June 2020

Mikhail Kashlev

6

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2 June 2020

Jeffrey N Strathern

7

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2 June 2020

language of work or name

English

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publication date

September 2014

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published in

PLOS Genetics

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2 June 2020

volume

10

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2 June 2020

issue

9

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2 June 2020

page(s)

e1004532

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Creative Commons CC0 License

2 June 2020

copyright license

start time

18 September 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

0 references

cites work

RNA polymerase structure, function, regulation, dynamics, fidelity, and roles in gene expression

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Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase

19 March 2017

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Dissection of Pol II trigger loop function and Pol II activity-dependent control of start site selection in vivo

19 March 2017

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Mechanism of Translesion Transcription by RNA Polymerase II and Its Role in Cellular Resistance to DNA Damage

19 March 2017

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Evolution of Two Modes of Intrinsic RNA Polymerase Transcript Cleavage

19 March 2017

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Requirements for catalysis in the Cre recombinase active site

19 March 2017

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Structural Basis of Transcription: Backtracked RNA Polymerase II at 3.4 Angstrom Resolution

19 March 2017

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Structural basis of transcription inhibition by alpha-amanitin and implications for RNA polymerase II translocation

19 March 2017

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The RNA polymerase II trigger loop functions in substrate selection and is directly targeted by alpha-amanitin

19 March 2017

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Structural basis for transcription elongation by bacterial RNA polymerase

19 March 2017

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Synapsis of loxP sites by Cre recombinase

19 March 2017

1 reference

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Stimulation of RNA polymerase II transcript cleavage activity contributes to maintain transcriptional fidelity in yeast.

19 March 2017

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RNA polymerase II subunit Rpb9 is important for transcriptional fidelity in vivo

19 March 2017

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Transcription elongation factor S-II maintains transcriptional fidelity and confers oxidative stress resistance.

19 March 2017

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Crystal structure of a wild-type Cre recombinase-loxP synapse reveals a novel spacer conformation suggesting an alternative mechanism for DNA cleavage activation

19 March 2017

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Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage

19 March 2017

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Complete, 12-subunit RNA polymerase II at 4.1-Å resolution: Implications for the initiation of transcription

19 March 2017

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Structural basis of transcription: RNA polymerase II at 2.8 angstrom resolution

19 March 2017

1 reference

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Cre recombinase: the universal reagent for genome tailoring

19 March 2017

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Three new dominant drug resistance cassettes for gene disruption in Saccharomyces cerevisiae

19 March 2017

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Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

19 March 2017

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Structure of Cre recombinase complexed with DNA in a site-specific recombination synapse

19 March 2017

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Transcription elongation through DNA arrest sites. A multistep process involving both RNA polymerase II subunit RPB9 and TFIIS.

19 March 2017

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In vitro characterization of mutant yeast RNA polymerase II with reduced binding for elongation factor TFIIS

19 March 2017

1 reference

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New heterologous modules for classical or PCR-based gene disruptions in Saccharomyces cerevisiae

19 March 2017

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5-Fluoroorotic acid as a selective agent in yeast molecular genetics

19 March 2017

1 reference

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Energetic and structural details of the trigger-loop closing transition in RNA polymerase II.

19 March 2017

1 reference

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Direct assessment of transcription fidelity by high-resolution RNA sequencing

29 September 2017

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Isolation and characterization of RNA polymerase rpoB mutations that alter transcription slippage during elongation in Escherichia coli

29 September 2017

1 reference

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The fidelity of transcription: RPB1 (RPO21) mutations that increase transcriptional slippage in S. cerevisiae.

29 September 2017

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The RNA polymerase bridge helix YFI motif in catalysis, fidelity and translocation

29 September 2017

1 reference

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Trigger loop dynamics mediate the balance between the transcriptional fidelity and speed of RNA polymerase II.

29 September 2017

1 reference

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Isolation and characterization of transcription fidelity mutants

29 September 2017

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RNA Polymerase II with Open and Closed Trigger Loops: Active Site Dynamics and Nucleic Acid Translocation

29 September 2017

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A comprehensive analysis of translational missense errors in the yeast Saccharomyces cerevisiae.

29 September 2017

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DNA polymerase fidelity: comparing direct competition of right and wrong dNTP substrates with steady state and pre-steady state kinetics

29 September 2017

1 reference

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Rpb9 subunit controls transcription fidelity by delaying NTP sequestration in RNA polymerase II.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Single-molecule tracking of mRNA exiting from RNA polymerase II

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Structural basis of transcription: role of the trigger loop in substrate specificity and catalysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Members of the SAGA and Mediator complexes are partners of the transcription elongation factor TFIIS.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Rpb4 and Rpb9 mediate subpathways of transcription-coupled DNA repair in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Use of an in vivo reporter assay to test for transcriptional and translational fidelity in yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Controlling gene expression in yeast by inducible site-specific recombination

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Fidelity of RNA polymerase II transcription controlled by elongation factor TFIIS.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

P1 site-specific recombination: nucleotide sequence of the recombining sites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Transcriptional proofreading in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Two systems of glucose repression of the GAL1 promoter in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Asymmetry and directionality in production of new cell types during clonal growth: the switching pattern of homothallic yeast

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

From structure to systems: high-resolution, quantitative genetic analysis of RNA polymerase II.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Template misalignment in multisubunit RNA polymerases and transcription fidelity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

A mutational analysis of the bacteriophage P1 recombinase Cre.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Connections between translation, transcription and replication error-rates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Novel RNA polymerase II mutation suppresses transcriptional fidelity and oxidative stress sensitivity in rpb9Delta yeast

3 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004532

Fidelity of RNA polymerase II transcription: Role of Rpb9 [corrected] in error detection and proofreading

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004532

Cre recombinase: The universal reagent for genome tailoring

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004532

Control of gene expression by artificial introns in Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004532

Screening the yeast "disruptome" for mutants affecting resistance to the immunosuppressive drug, mycophenolic acid

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004532

Assays and affinity purification of biotinylated and nonbiotinylated forms of double-tagged core RNA polymerase II from Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004532

Intrinsic translocation barrier as an initial step in pausing by RNA polymerase II.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004532

Multiple mechanisms confining RNA polymerase II ubiquitylation to polymerases undergoing transcriptional arrest

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004532

Yeast Transcript Elongation Factor (TFIIS), Structure and Function

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004532

Molecular analysis of a cell lineage

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004532

A Ratchet Mechanism of Transcription Elongation and Its Control

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1004532

Analysis of Fgf8 gene function in vertebrate development

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4168980

Identification of Cre residues involved in synapsis, isomerization, and catalysis

27 November 2018

1 reference

12 December 2020

The 8-nucleotide-long RNA:DNA hybrid is a primary stability determinant of the RNA polymerase II elongation complex

1 reference

12 December 2020

An RNA polymerase mutant with reduced accuracy of chain elongation

1 reference

12 December 2020

Cre mutants with altered DNA binding properties

1 reference

12 December 2020

Complete RNA polymerase II elongation complex structure and its interactions with NTP and TFIIS

1 reference

12 December 2020

RNA polymerase II subunit RPB9 is required for accurate start site selection

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1004532

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25232834%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25232834%20AND%20SRC:MED&resulttype=core&format=json

2 June 2020

PubMed publication ID

25232834

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25232834%20AND%20SRC:MED&resulttype=core&format=json