The MG-RAST metagenomics database and portal in 2015 (Q28603037)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

title

The MG-RAST metagenomics database and portal in 2015 (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

0 references

1 reference

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

author name string

Andreas Wilke

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Jared Bischof

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Wolfgang Gerlach

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Elizabeth Glass

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Travis Harrison

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Kevin P Keegan

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Tobias Paczian

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Saurabh Bagchi

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Ananth Grama

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Somali Chaterji

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

Folker Meyer

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

language of work or name

English

0 references

publication date

9 December 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

volume

44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

issue

D1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

page(s)

D590-4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

Data, information, knowledge and principle: back to metabolism in KEGG

2 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

Metagenomics - a guide from sampling to data analysis

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

InterPro in 2011: new developments in the family and domain prediction database

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

The Genomic Standards Consortium

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

MUSCLE: multiple sequence alignment with high accuracy and high throughput

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

BLAT—The BLAST-Like Alignment Tool

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

Fast and sensitive protein alignment using DIAMOND

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

23 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

Metazen - metadata capture for metagenomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

A RESTful API for accessing microbial community data for MG-RAST.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

The environment ontology: contextualising biological and biomedical entities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

EBI metagenomics--a new resource for the analysis and archiving of metagenomic data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

Phyloseq: a bioconductor package for handling and analysis of high-throughput phylogenetic sequence data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

IMG/M: a data management and analysis system for metagenomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702923

Draft genome sequence of Halomonas lutea strain YIM 91125(T) (DSM 23508(T)) isolated from the alkaline Lake Ebinur in Northwest China

29 September 2017

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1322

PHYLOSEQ: A BIOCONDUCTOR PACKAGE FOR HANDLING AND ANALYSIS OF HIGH-THROUGHPUT PHYLOGENETIC SEQUENCE DATA

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKV1322

21 January 2018

Identifiers

DOI

10.1093/NAR/GKV1322

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/WilkeBGGHKPTBGC16

2 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

PubMed publication ID

26656948

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26656948%20AND%20SRC:MED&resulttype=core&format=json