Supporting community annotation and user collaboration in the integrated microbial genomes (IMG) system (Q28603686)

Nikos C Kyrpides

14

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Marcel Huntemann

10

Marcel Huntemann

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Krishna Palaniappan

3

Krishna Palaniappan

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Manoj Pillay

8

Manoj Pillay

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Victor Markowitz

2

Victor M Markowitz

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Michalis Hadjithomas

9

Michalis Hadjithomas

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Ernest Szeto

4

Ernest Szeto

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Galina Ovchinnikova

12

Galina Ovchinnikova

0 references

Jinghua Huang

6

Jinghua Huang

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Natalia Mikhailova

11

Natalia Mikhailova

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author name string

I-Min A Chen

1

0 references

Ken Chu

5

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Anna Ratner

Pfam: the protein families database

7

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language of work or name

English

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publication date

26 April 2016

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published in

BMC Genomics

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volume

17

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issue

1

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page(s)

307

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cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

Data, information, knowledge and principle: back to metabolism in KEGG

17 March 2017

1 reference

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Improving microbial genome annotations in an integrated database context

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

Complete Genome Sequence of a Thermophilic Methanogen, Methanocella conradii HZ254, Isolated from Chinese Rice Field Soil

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

WikiPathways: building research communities on biological pathways

17 March 2017

1 reference

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miRBase: integrating microRNA annotation and deep-sequencing data

17 March 2017

1 reference

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TOPSAN: a collaborative annotation environment for structural genomics

17 March 2017

1 reference

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BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

The RNA WikiProject: community annotation of RNA families

17 March 2017

1 reference

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big data: The future of biocuration

17 March 2017

1 reference

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A gene wiki for community annotation of gene function

17 March 2017

1 reference

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Calling on a million minds for community annotation in WikiProteins

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

ORegAnno: an open-access community-driven resource for regulatory annotation

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

TIGRFAMs and Genome Properties: tools for the assignment of molecular function and biological process in prokaryotic genomes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

The COG database: an updated version includes eukaryotes

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

Artemis: sequence visualization and annotation

17 March 2017

1 reference

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A wiki for the life sciences where authorship matters

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

IMG ER: a system for microbial genome annotation expert review and curation

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

Big Data: Astronomical or Genomical?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

Comparative genomics of three Methanocellales strains reveal novel taxonomic and metabolic features.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification.

29 September 2017

1 reference

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Plant-associated symbiotic Burkholderia species lack hallmark strategies required in mammalian pathogenesis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

IMG/M 4 version of the integrated metagenome comparative analysis system

29 September 2017

1 reference

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Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.

29 September 2017

1 reference

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Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

SOP for pathway inference in Integrated Microbial Genomes (IMG)

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

Genome sequence of the nitroaromatic compound-degrading Bacterium Burkholderia sp. strain SJ98.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4847265

Whole-genome sequence annotation: 'Going wrong with confidence'.

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-016-2629-Y

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-016-2629-Y

10.1186/S12864-016-2629-Y

21 January 2018

Identifiers

DOI

1 reference

Dimensions Publication ID

1013486578

0 references

1 reference

1 reference

PubMed publication ID

27118214

1 reference