COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project (Q28649474)

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Nicolas Le Novère

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Frank Bergmann

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Richard Adams

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Jonathan Cooper

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Mihai Glonț

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Martin Golebiewski

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Michael Hucka

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Camille Laibe

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

David Nickerson

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Nicolas Rodriguez

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Florent Yvon

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

13

Herbert M Sauro

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

16

Dagmar Waltemath

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

11

Brett G Olivier

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

3

Stuart Moodie

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

author name string

Andrew K Miller

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Martin Scharm

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

language of work or name

English

0 references

publication date

14 December 2014

0 references

published in

BMC Bioinformatics

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

volume

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

page(s)

369

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

11 June 2020

issue

1

0 references

copyright license

start time

1 December 2014

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/s12859-014-0369-z

0 references

cites work

Structuring research methods and data with the research object model: genomics workflows as a case study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Integration of biochemical and electrical signaling-multiscale model of the medium spiny neuron of the striatum

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

A whole-cell computational model predicts phenotype from genotype

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Identifiers.org and MIRIAM Registry: community resources to provide persistent identification

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Controlled vocabularies and semantics in systems biology

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

The SEEK: a platform for sharing data and models in systems biology

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Minimum Information About a Simulation Experiment (MIASE)

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Minimum information requested in the annotation of biochemical models (MIRIAM)

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Towards NeuroML: model description methods for collaborative modelling in neuroscience

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Ten simple rules for reproducible computational research

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

A community-driven global reconstruction of human metabolism.

23 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

The Systems Biology Graphical Notation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

SBML Level 3 package: Hierarchical Model Composition, Version 1 Release 3.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

JSim, an open-source modeling system for data analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Improving the reuse of computational models through version control

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Software support for SBGN maps: SBGN-ML and LibSBGN.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Revision history aware repositories of computational models of biological systems.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

SBRML: a markup language for associating systems biology data with models

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Computer science. Accessible reproducible research

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

FieldML: concepts and implementation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Practical application of CellML 1.1: The integration of new mechanisms into a human ventricular myocyte model

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

Modelling cellular systems with PySCeS.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

The Virtual Cell: a software environment for computational cell biology

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4272562

High-throughput functional curation of cellular electrophysiology models.

3 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-014-0369-Z

A standard protocol for describing individual-based and agent-based models

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-014-0369-Z

Integrated metabolic spatial-temporal model for the prediction of ammonia detoxification during liver damage and regeneration

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12859-014-0369-Z

RFC 3986: Uniform Resource Identifier (URI): Generic Syntax

21 January 2018

1 reference

COCI

https://opencitations.net/index/coci/api/v1/citations/10.17487/RFC3986

10.1186/S12859-014-0369-Z

25 July 2022

Identifiers

DOI

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

journals/bmcbi/BergmannAMCGGHLMNORSSSWYN14

11 June 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1030949788

0 references

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25494900%20AND%20SRC:MED&resulttype=core&format=json