KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems (Q28651992)

April 2022 Public Data File from Crossref

copyright status

copyrighted

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exact match

https://scigraph.springernature.com/pub.10.1186/s12918-014-0085-3

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cites work

New types of experimental data shape the use of enzyme kinetics for dynamic network modeling

1 reference

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DIPSBC--data integration platform for systems biology collaborations

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

SABIO-RK--database for biochemical reaction kinetics

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Public availability of published research data in high-impact journals

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Minimum Information About a Simulation Experiment (MIASE)

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Database resources of the National Center for Biotechnology Information

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

myExperiment: a repository and social network for the sharing of bioinformatics workflows

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

ChEBI: a database and ontology for chemical entities of biological interest

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Universally sloppy parameter sensitivities in systems biology models

17 March 2017

1 reference

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BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

CellML: its future, present and past

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR)

17 March 2017

1 reference

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The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

BRENDA, enzyme data and metabolic information

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Minimum information about a microarray experiment (MIAME)-toward standards for microarray data

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

KEGG: kyoto encyclopedia of genes and genomes

17 March 2017

1 reference

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The MetaCyc Database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

17 March 2017

1 reference

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Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox

7 April 2017

1 reference

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Update on activities at the Universal Protein Resource (UniProt) in 2013

7 April 2017

1 reference

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COPASI--a COmplex PAthway SImulator

7 April 2017

1 reference

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Standard reporting requirements for biological samples in metabolomics experiments: microbial and in vitro biology experiments.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Parameter identification of in vivo kinetic models: limitations and challenges

3 June 2018

1 reference

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A systems-level approach for metabolic engineering of yeast cell factories.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Critical perspective on the consequences of the limited availability of kinetic data in metabolic dynamic modelling.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

ArrayExpress update--an archive of microarray and high-throughput sequencing-based functional genomics experiments

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Dynamics and control of the central carbon metabolism in hepatoma cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Designing and encoding models for synthetic biology

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Standardizing experimental protocols

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Formulating genome-scale kinetic models in the post-genome era.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Multiple high-throughput analyses monitor the response of E. coli to perturbations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

A systems approach to measuring the binding energy landscapes of transcription factors

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

A method for estimation of elasticities in metabolic networks using steady state and dynamic metabolomics data and linlog kinetics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

How can biochemical reactions within cells differ from those in test tubes?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Web-based kinetic modelling using JWS Online.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

In vivo dynamics of the pentose phosphate pathway in Saccharomyces cerevisiae.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

The EcoCyc and MetaCyc databases

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Cytoarchitecture and physical properties of cytoplasm: volume, viscosity, diffusion, intracellular surface area

3 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

3 June 2018

https://api.crossref.org/works/10.1186%2FS12918-014-0085-3

Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4236735

Kinetic modelling reveals current limitations in the production of ethanol from xylose by recombinant Saccharomyces cerevisiae.

3 June 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-014-0085-3

Dynamic modeling of the central carbon metabolism of Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-014-0085-3

Monitoring and modeling of the reaction dynamics in the valine/leucine synthesis pathway in Corynebacterium glutamicum.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-014-0085-3

Model reduction and a priori kinetic parameter identifiability analysis using metabolome time series for metabolic reaction networks with linlog kinetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-014-0085-3

Dynamic simulation and metabolic re-design of a branched pathway using linlog kinetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-014-0085-3

Bringing metabolic networks to life: convenience rate law and thermodynamic constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-014-0085-3

Systems Biology Toolbox for MATLAB: a computational platform for research in systems biology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-014-0085-3

Disclose all data in publications

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-014-0085-3

Asymptotology of chemical reaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2FS12918-014-0085-3

10.1186/S12918-014-0085-3

21 January 2018

Identifiers

DOI

1 reference

2252744

DBLP publication ID

journals/bmcsb/CostaVV14

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1044443967

0 references

2252744

1 reference

1 reference

1 reference