Bayesian estimation of speciation and extinction from incomplete fossil occurrence data (Q28652301)

3

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Alexandre Antonelli

object named as

Alexandre Antonelli

4

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Jan Schnitzler

2

object named as

Jan Schnitzler

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author name string

Daniele Silvestro

A simple method for estimating informative node age priors for the fossil calibration of molecular divergence time analyses

1

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language of work or name

English

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publication date

May 2014

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published in

Systematic Biology

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volume

63

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issue

3

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page(s)

349-67

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cites work

1 reference

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Clade age and species richness are decoupled across the eukaryotic tree of life

17 March 2017

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17 March 2017

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Evidence for a convergent slowdown in primate molecular rates and its implications for the timing of early primate evolution

17 March 2017

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Speciation and extinction drive the appearance of directional range size evolution in phylogenies and the fossil record

17 March 2017

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17 March 2017

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Graptoloid diversity and disparity became decoupled during the Ordovician mass extinction

17 March 2017

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Multiple continental radiations and correlates of diversification in Lupinus (Leguminosae): testing for key innovation with incomplete taxon sampling

17 March 2017

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A Bayesian framework to estimate diversification rates and their variation through time and space

17 March 2017

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Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record

17 March 2017

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Reconciling molecular phylogenies with the fossil record

17 March 2017

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Calibrated tree priors for relaxed phylogenetics and divergence time estimation

17 March 2017

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Marine planktonic microbes survived climatic instabilities in the past

17 March 2017

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Mammalian phylogeny reveals recent diversification rate shifts

17 March 2017

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Dating primate divergences through an integrated analysis of palaeontological and molecular data

17 March 2017

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Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

17 March 2017

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Higher origination and extinction rates in larger mammals

17 March 2017

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The rise and fall of species: implications for macroevolutionary and macroecological studies

17 March 2017

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Relaxed phylogenetics and dating with confidence

17 March 2017

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Rates of speciation in the fossil record

17 March 2017

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Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method

17 March 2017

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Estimating the rate of evolution of the rate of molecular evolution

17 March 2017

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Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

7 April 2017

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Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference

7 April 2017

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Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

Extinction rates should not be estimated from molecular phylogenies

7 April 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

Estimating diversification rates from phylogenetic information

7 April 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

A general comparison of relaxed molecular clock models

7 April 2017

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

Estimating a binary character's effect on speciation and extinction

7 April 2017

1 reference

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Likelihood methods for detecting temporal shifts in diversification rates

7 April 2017

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Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites

7 April 2017

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The reconstructed evolutionary process

7 April 2017

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How the Red Queen Drives Terrestrial Mammals to Extinction

7 April 2017

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Disentangling the effects of key innovations on the diversification of Bromelioideae (bromeliaceae).

9 May 2017

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Diversity in time and space: wanted dead and alive

3 June 2018

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Oceanographic controls on the diversity and extinction of planktonic foraminifera

3 June 2018

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Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

Mass extinction, gradual cooling, or rapid radiation? Reconstructing the spatiotemporal evolution of the ancient angiosperm genus Hedyosmum (Chloranthaceae) using empirical and simulated approaches

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

Taxonomic structure of the fossil record is shaped by sampling bias

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

DivBayes and SubT: exploring species diversification using Bayesian statistics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

Factors influencing diversification in angiosperms: at the crossroads of intrinsic and extrinsic traits

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

Interplay between changing climate and species' ecology drives macroevolutionary dynamics.

3 June 2018

1 reference

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Improving marginal likelihood estimation for Bayesian phylogenetic model selection

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

When can decreasing diversification rates be detected with molecular phylogenies and the fossil record?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

The Shifting Balance of Diversity Among Major Marine Animal Groups

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

Diversity dynamics: molecular phylogenies need the fossil record

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

On incomplete sampling under birth-death models and connections to the sampling-based coalescent

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

Phanerozoic trends in the global diversity of marine invertebrates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

Testing for equal rates of cladogenesis in diverse taxa

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

A kill curve for Phanerozoic marine species

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

Phylogenetic relationships of the five extant Rhinoceros species (Rhinocerotidae, Perissodactyla) based on mitochondrial cytochrome b and 12S rRNA genes

3 June 2018

1 reference

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Bayesian Model Selection and Model Averaging

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

Bayesian estimation of speciation and extinction probabilities from (in)complete phylogenies.

3 June 2018

1 reference

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A new method for handling missing species in diversification analysis applicable to randomly or nonrandomly sampled phylogenies

21 January 2018

1 reference

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The reconstructed evolutionary process with the fossil record

21 January 2018

1 reference

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Estimating trait-dependent speciation and extinction rates from incompletely resolved phylogenies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU006

Rise and fall of species occupancy in Cenozoic fossil mollusks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU006

Reversible jump Markov chain Monte Carlo computation and Bayesian model determination

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU006

PHYLOGENIES WITHOUT FOSSILS.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU006

INFERRING THE RATES OF BRANCHING AND EXTINCTION FROM MOLECULAR PHYLOGENIES.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU006

Computing Bayes factors using thermodynamic integration.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU006

A Phylogenetic Model for Investigating Correlated Evolution of Substitution Rates and Continuous Phenotypic Characters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU006

Inferring speciation rates from phylogenies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU006

Can extinction rates be estimated without fossils?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU006

Reconstructing shifts in diversification rates on phylogenetic trees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU006

Molecular phylogeny and evolution of the Perissodactyla

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYU006

Fossil preservation and the stratigraphic ranges of taxa.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4361715

Estimating Speciation and Extinction Rates for Phylogenies of Higher Taxa

27 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24510972

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/SYSBIO/SYU006

1 reference

1 reference

1 reference

PubMed publication ID

24510972

1 reference