A simple method for estimating informative node age priors for the fossil calibration of molecular divergence time analyses (Q28681860)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23755303%20AND%20SRC:MED&resulttype=core&format=json

2 March 2020

title

A simple method for estimating informative node age priors for the fossil calibration of molecular divergence time analyses (English)

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2 March 2020

0 references

1

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2 March 2020

Carl Simpson

series ordinal

3

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2 March 2020

author name string

Andrew B Smith

series ordinal

2

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2 March 2020

Derrick J Zwickl

series ordinal

4

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2 March 2020

language of work or name

English

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publication date

5 June 2013

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2 March 2020

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2 March 2020

volume

8

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2 March 2020

page(s)

e66245

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2 March 2020

issue

6

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Creative Commons Attribution 4.0 International

2 March 2020

copyright license

start time

5 June 2013

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Bayesian phylogenetics with BEAUti and the BEAST 1.7

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Best practices for justifying fossil calibrations

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Exploring uncertainty in the calibration of the molecular clock

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Calibrated tree priors for relaxed phylogenetics and divergence time estimation

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Establishing a time-scale for plant evolution

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Dating primate divergences through an integrated analysis of palaeontological and molecular data

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Sequences, stratigraphy and scenarios: what can we say about the fossil record of the earliest tetrapods?

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Fossil and molecular evidence constrain scenarios for the early evolutionary and biogeographic history of hystricognathous rodents

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Colloquium paper: dynamics of origination and extinction in the marine fossil record

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

The effect of inappropriate calibration: three case studies in molecular ecology

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Paleontological evidence to date the tree of life

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Relaxed phylogenetics and dating with confidence

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Using the fossil record to estimate the age of the last common ancestor of extant primates

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times

17 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Estimating the rate of evolution of the rate of molecular evolution

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Rocks and clocks: calibrating the Tree of Life using fossils and molecules

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Inferring speciation times under an episodic molecular clock

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Testing the impact of calibration on molecular divergence times using a fossil-rich group: the case of Nothofagus (Fagales).

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

When can decreasing diversification rates be detected with molecular phylogenies and the fossil record?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

The impact of the representation of fossil calibrations on Bayesian estimation of species divergence times

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Recent long-distance dispersal overshadows ancient biogeographical patterns in a pantropical angiosperm family (Simaroubaceae, Sapindales).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Phylogenetic uncertainty and molecular clock calibrations: a case study of legless lizards (Pygopodidae, Gekkota).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

A simple method for bracketing absolute divergence times on molecular phylogenies using multiple fossil calibration points

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Testing the molecular clock: molecular and paleontological estimates of divergence times in the Echinoidea (Echinodermata).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Relaxed molecular clocks for dating historical plant dispersal events

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Evolutionary and preservational constraints on origins of biologic groups: divergence times of eutherian mammals.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

Caveats on the use of fossil calibrations for molecular dating: a comment on Near et al.

3 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0066245

Playing chicken (Gallus gallus): methodological inconsistencies of molecular divergence date estimates due to secondary calibration points.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0066245

Assessing calibration uncertainty in molecular dating: the assignment of fossils to alternative calibration points

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0066245

TreeTime: an extensible C++ software package for Bayesian phylogeny reconstruction with time-calibration.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0066245

A likelihood method for assessing molecular divergence time estimates and the placement of fossil calibrations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0066245

Four well-constrained calibration points from the vertebrate fossil record for molecular clock estimates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0066245

Integrating fossil preservation biases in the selection of calibrations for molecular divergence time estimation

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0066245

The phylogeny and classification of post-Palaeozoic echinoids

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0066245

Fossil preservation and the stratigraphic ranges of taxa.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3673923

27 November 2018

Timescales and timetrees

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23755303

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12 December 2020

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Identifiers

DOI

10.1371/JOURNAL.PONE.0066245

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2 March 2020

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2 March 2020

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