Phylogenetic classification of short environmental DNA fragments (Q28754706)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18285365%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

title

Phylogenetic classification of short environmental DNA fragments (English)

1 reference

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3 January 2020

1 reference

1 reference

1

1 reference

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3 January 2020

Alexander Goesmann

series ordinal

3

1 reference

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3 January 2020

Tim Wilhelm Nattkemper

series ordinal

5

1 reference

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3 January 2020

Robert A Edwards

series ordinal

7

1 reference

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3 January 2020

6

Forest Rohwer

1 reference

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3 January 2020

8

Jens Stoye

1 reference

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3 January 2020

4

Scott Kelley

1 reference

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3 January 2020

2

Naryttza N Diaz

1 reference

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3 January 2020

language of work or name

English

0 references

publication date

19 February 2008

1 reference

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3 January 2020

published in

Nucleic Acids Research

1 reference

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3 January 2020

volume

36

1 reference

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3 January 2020

issue

7

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3 January 2020

page(s)

2230-2239

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MEGAN analysis of metagenomic data

3 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

An obesity-associated gut microbiome with increased capacity for energy harvest

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Database resources of the National Center for Biotechnology Information

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Stromatolite reef from the Early Archaean era of Australia

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Metagenomic analysis of the human distal gut microbiome

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Using pyrosequencing to shed light on deep mine microbial ecology

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Pfam: clans, web tools and services

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Composition and structure of microbial communities from stromatolites of Hamelin Pool in Shark Bay, Western Australia

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Genome sequencing in microfabricated high-density picolitre reactors

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Environmental genome shotgun sequencing of the Sargasso Sea

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

The Uncultured Microbial Majority

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Genomic analysis of uncultured marine viral communities

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Exploring prokaryotic diversity in the genomic era

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Profile hidden Markov models

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Basic local alignment search tool

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Phylogenetic structure of the prokaryotic domain: The primary kingdoms

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

16 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Community structure and metabolism through reconstruction of microbial genomes from the environment

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Bacterial rhodopsin: evidence for a new type of phototrophy in the sea

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Accurate phylogenetic classification of variable-length DNA fragments

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Phylogenetic analysis of general bacterial porins: a phylogenomic case study

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Metagenomics: DNA sequencing of environmental samples.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

Application of tetranucleotide frequencies for the assignment of genomic fragments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2367736

The closest BLAST hit is often not the nearest neighbor.

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN038

Evolution of species interactions in a biofilm community

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKN038

21 January 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/18285365

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKN038

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18285365%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

1 reference

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18285365%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

2 references