ESTimating plant phylogeny: lessons from partitioning (Q28767886)

6

object named as

Gloria M Coruzzi

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Dennis William Stevenson

5

object named as

Dennis W Stevenson

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author name string

Jose E B de la Torre

1

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Mary G Egan

2

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Manpreet S Katari

3

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Eric D Brenner

Phylogeny of seed plants based on evidence from eight genes

4

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language of work or name

English

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publication date

15 June 2006

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published in

BMC Evolutionary Biology

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volume

6

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issue

1

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page(s)

48

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cites work

1 reference

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16 March 2017

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A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

16 March 2017

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16 March 2017

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16 March 2017

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16 March 2017

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Phylogeny of seed plants based on all three genomic compartments: extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers

16 March 2017

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Seed plant phylogeny inferred from all three plant genomes: monophyly of extant gymnosperms and origin of Gnetales from conifers

16 March 2017

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16 March 2017

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MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants

16 March 2017

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16 March 2017

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Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method

16 March 2017

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

16 March 2017

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16 March 2017

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16 March 2017

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Bayesian inference of phylogeny and its impact on evolutionary biology

7 April 2017

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Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

7 April 2017

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Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia

7 April 2017

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Phylogenomics of eukaryotes: impact of missing data on large alignments

7 April 2017

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Angiosperm phylogeny inferred from multiple genes as a tool for comparative biology

7 April 2017

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Phylogenetic signal in nucleotide data from seed plants: implications for resolving the seed plant tree of life

7 April 2017

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OrthologID: automation of genome-scale ortholog identification within a parsimony framework

3 June 2018

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Angiosperm divergence times: the effect of genes, codon positions, and time constraints

3 June 2018

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Hidden likelihood support in genomic data: can forty-five wrongs make a right?

3 June 2018

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Animal phylogenomics: multiple interspecific genome comparisons

3 June 2018

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Expressed sequence tags: alternative or complement to whole genome sequences?

3 June 2018

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Missing data, incomplete taxa, and phylogenetic accuracy

3 June 2018

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Comparative genomics of Physcomitrella patens gametophytic transcriptome and Arabidopsis thaliana: implication for land plant evolution

3 June 2018

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Combined support for wholesale taxic atavism in gavialine crocodylians

3 June 2018

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Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana

3 June 2018

1 reference

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Genome trees and the tree of life

3 June 2018

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Exploring data interaction and nucleotide alignment in a multiple gene analysis of Ips (Coleoptera: Scolytinae).

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Essential genes are more evolutionarily conserved than are nonessential genes in bacteria

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Multiple sources of character information and the phylogeny of Hawaiian drosophilids

3 June 2018

1 reference

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How can we deliver the large plant genomes? Strategies and perspectives

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Unraveling plant metabolism by EST analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Seed plant phylogeny: Demise of the anthophyte hypothesis?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Analysis of xylem formation in pine by cDNA sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Molecules, morphology, fossils, and the relationship of angiosperms and Gnetales

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Noncoding sequences from the slowly evolving chloroplast inverted repeat in addition to rbcL data do not support gnetalean affinities of angiosperms

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Alignment-ambiguous nucleotide sites and the exclusion of systematic data

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Molecular evidence on plant divergence times

3 June 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Detecting putative orthologs.

27 November 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Gene expression during formation of earlywood and latewood in loblolly pine: expression profiles of 350 genes.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Moss transcriptome and beyond

27 November 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

An automated phylogenetic key for classifying homeoboxes

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Essential Genes Are More Evolutionarily Conserved Than Are Nonessential Genes in Bacteria

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

The evolution of gymnosperms redrawn by phytochrome genes: the Gnetatae appear at the base of the gymnosperms

27 November 2018

1 reference

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Functional genomics and cell wall biosynthesis in loblolly pine

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

Protein dispensability and rate of evolution

27 November 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1564041

The phylogeny of land plants inferred from 18S rDNA sequences: pushing the limits of rDNA signal?

27 November 2018

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