Chemical Tools for Dissecting the Role of lncRNAs in Epigenetic Regulation (Q28821825)

Probing Xist RNA Structure in Cells Using Targeted Structure-Seq

Europe PubMed Central

title

Chemical Tools for Dissecting the Role of lncRNAs in Epigenetic Regulation (English)

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author name string

Sarah Nainar

series ordinal

1

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Chao Feng

series ordinal

2

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Robert C Spitale

series ordinal

3

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language of work or name

English

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publication date

19 August 2016

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published in

ACS Chemical Biology

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volume

11

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issue

8

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page(s)

2091-100

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cites work

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DMS footprinting of structured RNAs and RNA-protein complexes

16 March 2017

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16 March 2017

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RNA-binding proteins: modular design for efficient function

16 March 2017

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XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure

16 March 2017

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16 March 2017

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A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

7 April 2017

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7 April 2017

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Long noncoding RNAs: functional surprises from the RNA world

7 April 2017

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7 April 2017

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7 April 2017

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lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3' UTRs via Alu elements

7 April 2017

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RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

7 April 2017

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The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus

7 April 2017

1 reference

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7 April 2017

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Rapid evolutionary turnover underlies conserved lncRNA-genome interactions

3 June 2018

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3 June 2018

1 reference

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RNA Structures as Mediators of Neurological Diseases and as Drug Targets

3 June 2018

1 reference

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Long noncoding RNAs: Lessons from genomic imprinting

3 June 2018

1 reference

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The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3.

3 June 2018

1 reference

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HOTAIR forms an intricate and modular secondary structure.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5068361

Structural imprints in vivo decode RNA regulatory mechanisms

3 June 2018

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3 June 2018

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3 June 2018

1 reference

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3 June 2018

1 reference

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3 June 2018

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3 June 2018

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Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing

3 June 2018

1 reference

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The determination of RNA folding nearest neighbor parameters

3 June 2018

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3 June 2018

1 reference

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Chromatin modifiers and remodellers: regulators of cellular differentiation

3 June 2018

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3 June 2018

1 reference

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Binding interactions between long noncoding RNA HOTAIR and PRC2 proteins

3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome

3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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RNA-binding protein immunopurification-microarray (RIP-Chip) analysis to profile localized RNAs

3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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3 June 2018

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Probing RNA structure by lead cleavage

3 June 2018

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The tale beyond the tail: histone core domain modifications and the regulation of chromatin structure

3 June 2018

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3 June 2018

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3 June 2018

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Nuclease footprint analyses of the interactions between RNase P ribozyme and a model mRNA substrate

3 June 2018

1 reference

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Genes expressed in neurons of adult male Drosophila

3 June 2018

1 reference

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roX1 RNA paints the X chromosome of male Drosophila and is regulated by the dosage compensation system

3 June 2018

1 reference

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3 June 2018

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Structures involved in Tetrahymena rRNA self-splicing and RNA enzyme activity

3 June 2018

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Defining the inside and outside of a catalytic RNA molecule

3 June 2018

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Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension

3 June 2018

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3 June 2018

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3 June 2018

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50 years of protein acetylation: from gene regulation to epigenetics, metabolism and beyond

3 June 2018

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In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features.

26 November 2018

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ATP-dependent roX RNA remodeling by the helicase maleless enables specific association of MSL proteins

26 November 2018

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Tandem stem-loops in roX RNAs act together to mediate X chromosome dosage compensation in Drosophila

26 November 2018

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RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts

26 November 2018

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Thermal unfolding of a group I ribozyme: the low-temperature transition is primarily disruption of tertiary structure.

26 November 2018

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Improved parameters for prediction of RNA structure

26 November 2018

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inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Predicting thermodynamic properties of RNA

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