In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features. (Q53306941)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

title

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

author name string

Yiliang Ding

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Yin Tang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Yu Zhang

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Philip C Bevilacqua

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

Sarah M Assmann

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

language of work or name

English

0 references

publication date

24 November 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

volume

505

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

issue

7485

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

1 March 2020

page(s)

696-700

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

https://scigraph.springernature.com/pub.10.1038/nature12756

1 March 2020

exact match

0 references

cites work

Regulation of translation via mRNA structure in prokaryotes and eukaryotes

1 reference

12 December 2020

Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana

1 reference

12 December 2020

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

1 reference

12 December 2020

Regulatory impact of RNA secondary structure across the Arabidopsis transcriptome

1 reference

12 December 2020

Genome-wide measurement of RNA folding energies

1 reference

12 December 2020

The linkage between magnesium binding and RNA folding.

1 reference

12 December 2020

The accuracy of ribosomal RNA comparative structure models

1 reference

12 December 2020

Compilation of mRNA polyadenylation signals in Arabidopsis revealed a new signal element and potential secondary structures.

1 reference

12 December 2020

RNA folding affects the recruitment of SR proteins by mouse and human polypurinic enhancer elements in the fibronectin EDA exon

1 reference

12 December 2020

New insights into RNA secondary structure in the alternative splicing of pre-mRNAs

1 reference

12 December 2020

Genome-wide mapping of alternative splicing in Arabidopsis thaliana

1 reference

12 December 2020

RNA folding in living cells

1 reference

12 December 2020

Use of dimethyl sulfate to probe RNA structure in vivo

1 reference

12 December 2020

RNAstructure: software for RNA secondary structure prediction and analysis

1 reference

12 December 2020

Alternative splicing caused by RNA secondary structure.

1 reference

12 December 2020

Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

1 reference

12 December 2020

Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis

1 reference

12 December 2020

Accurate SHAPE-directed RNA secondary structure modeling, including pseudoknots

1 reference

12 December 2020

Transcriptome dynamics through alternative polyadenylation in developmental and environmental responses in plants revealed by deep sequencing.

1 reference

12 December 2020

Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension

1 reference

12 December 2020

In vivo analysis of plant RNA structure: soybean 18S ribosomal and ribulose-1,5-bisphosphate carboxylase small subunit RNAs

1 reference

12 December 2020

Analysis of the structure of Tetrahymena nuclear RNAs in vivo: telomerase RNA, the self-splicing rRNA intron, and U2 snRNA.

1 reference

12 December 2020

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

1 reference

12 December 2020

The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

1 reference

12 December 2020

Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation

1 reference

12 December 2020

Accurate SHAPE-directed RNA structure determination

1 reference

12 December 2020

The dynamic landscapes of RNA architecture

1 reference

12 December 2020

Diagnostic tests (2) - positive and negative predictive values

1 reference

12 December 2020

The centrality of RNA.

1 reference

12 December 2020

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

1 reference

12 December 2020

A periodic pattern of mRNA secondary structure created by the genetic code

1 reference

12 December 2020

Gene ontology: tool for the unification of biology

1 reference

12 December 2020

Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses

1 reference

12 December 2020

Genome-wide measurement of RNA secondary structure in yeast

1 reference

12 December 2020

FURTHER STUDIES ON THE ALKYLATION OF NUCLEIC ACIDS AND THEIR CONSTITUENT NUCLEOTIDES

1 reference

12 December 2020

RNA recognition by Tat-derived peptides: interaction in the major groove?

1 reference

12 December 2020

Improved RNA secondary structure prediction by maximizing expected pair accuracy

1 reference

12 December 2020

Identifiers

DOI

10.1038/NATURE12756

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

1 March 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24270811%20AND%20SRC:MED&resulttype=core&format=json