Genetic and biochemical analysis of CodY-binding sites in Bacillus subtilis (Q29346684)

11 April 2017

Genetic and biochemical analysis of CodY-binding sites in Bacillus subtilis (English)

1 reference

11 April 2017

Bacillus subtilis

1 reference

Boris R Belitsky

1

1 reference

PubMed ID

18083814

11 April 2017

Abraham L Sonenshein

series ordinal

2

1 reference

PubMed ID

18083814

11 April 2017

language of work or name

English

0 references

publication date

14 December 2007

1 reference

11 April 2017

Journal of Bacteriology

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11 April 2017

190

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11 April 2017

4

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11 April 2017

1224-1236

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PubMed ID

18083814

describes a project that uses

11 April 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2238193/fullTextXML

inferred from PubMed Central ID database lookup

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Characterization of relA and codY mutants of Listeria monocytogenes: identification of the CodY regulon and its role in virulence

11 April 2017

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Elaborate transcription regulation of the Bacillus subtilis ilv-leu operon involved in the biosynthesis of branched-chain amino acids through global regulators of CcpA, CodY and TnrA.

11 April 2017

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Activation of the Bacillus subtilis global regulator CodY by direct interaction with branched-chain amino acids

11 April 2017

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GabR, a member of a novel protein family, regulates the utilization of gamma-aminobutyrate in Bacillus subtilis

11 April 2017

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Bacillus subtilis CodY represses early-stationary-phase genes by sensing GTP levels

11 April 2017

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Role and regulation of Bacillus subtilis glutamate dehydrogenase genes

11 April 2017

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11 April 2017

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11 April 2017

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11 April 2017

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Interaction of Bacillus subtilis CodY with GTP.

11 April 2017

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Control of key metabolic intersections in Bacillus subtilis

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Isolation and characterization of biofilm formation-defective mutants of Staphylococcus aureus

3 June 2018

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Regulation of glutamine and glutamate metabolism by GlnR and GlnA in Streptococcus pneumoniae.

3 June 2018

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Overall control of nitrogen metabolism in Lactococcus lactis by CodY, and possible models for CodY regulation in Firmicutes.

3 June 2018

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The Lactococcus lactis CodY regulon: identification of a conserved cis-regulatory element.

3 June 2018

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A region of Bacillus subtilis CodY protein required for interaction with DNA.

3 June 2018

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CodY, a global regulator of stationary phase and virulence in Gram-positive bacteria

3 June 2018

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Probing direct interactions between CodY and the oppD promoter of Lactococcus lactis

3 June 2018

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Transcriptional organization and posttranscriptional regulation of the Bacillus subtilis branched-chain amino acid biosynthesis genes

3 June 2018

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Quantitative Metabolome Analysis Using Capillary Electrophoresis Mass Spectrometry

3 June 2018

1 reference

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CodY Is a Nutritional Repressor of Flagellar Gene Expression in Bacillus subtilis

3 June 2018

1 reference

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Additional targets of the Bacillus subtilis global regulator CodY identified by chromatin immunoprecipitation and genome-wide transcript analysis

3 June 2018

1 reference

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Complex regulation of the Bacillus subtilis aconitase gene

3 June 2018

1 reference

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Pleiotropic transcriptional repressor CodY senses the intracellular pool of branched-chain amino acids in Lactococcus lactis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Transcriptional activation of the Bacillus subtilis ackA promoter requires sequences upstream of the CcpA binding site

3 June 2018

1 reference

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The dppA gene of Bacillus subtilis encodes a new D-aminopeptidase

3 June 2018

1 reference

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An autoregulatory circuit affecting peptide signaling in Bacillus subtilis

3 June 2018

1 reference

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Regulation of nitrogen metabolism in Bacillus subtilis: vive la différence!

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Role of bkdR, a transcriptional activator of the sigL-dependent isoleucine and valine degradation pathway in Bacillus subtilis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

The complete genome of Bacillus subtilis: from sequence annotation to data management and analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Isolation and characterization of the lacA gene encoding beta-galactosidase in Bacillus subtilis and a regulator gene, lacR.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Expression of the Bacillus subtilis ureABC operon is controlled by multiple regulatory factors including CodY, GlnR, TnrA, and Spo0H

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

An lrp-like gene of Bacillus subtilis involved in branched-chain amino acid transport

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Plasmids for ectopic integration in Bacillus subtilis.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Expression of the Bacillus subtilis gabP gene is regulated independently in response to nitrogen and amino acid availability.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

CodY is required for nutritional repression of Bacillus subtilis genetic competence.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Role of CodY in regulation of the Bacillus subtilis hut operon.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

A CUC triplet confers leucine-dependent regulation of the Bacillus subtilis ilv-leu operon

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Mutations that relieve nutritional repression of the Bacillus subtilis dipeptide permease operon

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Analysis of Bacillus subtilis hut operon expression indicates that histidine-dependent induction is mediated primarily by transcriptional antitermination and that amino acid repression is mediated by two mechanisms: regulation of transcription initi

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

A gene required for nutritional repression of the Bacillus subtilis dipeptide permease operon

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Response of Guanosine 5′-Triphosphate Concentration to Nutritional Changes and Its Significance for Bacillus subtilis Sporulation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Structure of the gene for the transition state regulator, abrB: regulator synthesis is controlled by the spo0A sporulation gene in Bacillus subtilis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Regulation of histidine and proline degradation enzymes by amino acid availability in Bacillus subtilis.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

A target for carbon source-dependent negative regulation of the citB promoter of Bacillus subtilis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Transcriptional regulation of a Bacillus subtilis dipeptide transport operon

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

A Bacillus subtilis dipeptide transport system expressed early during sporulation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Transcriptional regulation of the ilv-leu operon of Bacillus subtilis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Mutations in a new chromosomal gene of Escherichia coli K-12, pcnB, reduce plasmid copy number of pBR322 and its derivatives.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Linking the nutritional status of Streptococcus pyogenes to alteration of transcriptional gene expression: the action of CodY and RelA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

The structure of CodY, a GTP- and isoleucine-responsive regulator of stationary phase and virulence in gram-positive bacteria

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Bacillus subtilis ilvB operon: an intersection of global regulons

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Identification of enzymes acting on alpha-glycated amino acids in Bacillus subtilis

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Intracellular effectors regulating the activity of the Lactococcus lactis CodY pleiotropic transcription regulator.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Guanine nucleotides guanosine 5'-diphosphate 3'-diphosphate and GTP co-operatively regulate the production of an antibiotic bacilysin in Bacillus subtilis

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

Interaction of CodY, a novel Bacillus subtilis DNA-binding protein, with the dpp promoter region.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238193

CodY-affected transcriptional gene expression of Streptococcus pyogenes during growth in human blood

26 November 2018

1 reference

12 December 2020

GTP pool expansion is necessary for the growth rate increase occurring in Bacillus subtilis after amino acids shift-up

1 reference

12 December 2020

Role of the DNA sequence downstream of the Bacillus subtilis hut promoter in regulation of the hut operon

1 reference

12 December 2020

Positive regulation of Bacillus subtilis ackA by CodY and CcpA: establishing a potential hierarchy in carbon flow

1 reference

12 December 2020

Identifiers

DOI

10.1128/JB.01780-07

1 reference

3685374

3685374

1 reference

1 reference

1 reference