Genome-wide transcription and the implications for genomic organization (Q29617047)

Europe PubMed Central

title

Genome-wide transcription and the implications for genomic organization (English)

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30 April 2017

author name string

Kapranov P

series ordinal

1

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30 April 2017

Willingham AT

series ordinal

2

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30 April 2017

Gingeras TR

series ordinal

3

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17486121

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17486121

30 April 2017

language of work or name

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30 April 2017

publication date

June 2007

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30 April 2017

published in

Nature Reviews Genetics

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30 April 2017

volume

8

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page(s)

413-23

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issue

6

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Genetic regulatory mechanisms in the synthesis of proteins

30 April 2017

cites work

2 references

31 March 2020

inferred from DOI database lookup

7 January 2021

based on heuristic

Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments

1 reference

Transcriptional maps of 10 human chromosomes at 5-nucleotide resolution

31 March 2020

1 reference

The ENCODE (ENCyclopedia Of DNA Elements) Project

31 March 2020

1 reference

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

31 March 2020

1 reference

The transcriptional landscape of the mammalian genome

31 March 2020

1 reference

31 March 2020

TUF love for "junk" DNA.

1 reference

Antisense transcription in the mammalian transcriptome

31 March 2020

1 reference

A large quantity of novel human antisense transcripts detected by LongSAGE.

31 March 2020

1 reference

Genome-wide in silico identification and analysis of cis natural antisense transcripts (cis-NATs) in ten species

31 March 2020

1 reference

Genome-wide analysis of mammalian promoter architecture and evolution

31 March 2020

1 reference

Biological function of unannotated transcription during the early development of Drosophila melanogaster

31 March 2020

1 reference

Examples of the complex architecture of the human transcriptome revealed by RACE and high-density tiling arrays

31 March 2020

1 reference

Tandem chimerism as a means to increase protein complexity in the human genome

31 March 2020

1 reference

Transcription-mediated gene fusion in the human genome

31 March 2020

1 reference

Alternative trans-splicing: a novel mode of pre-mRNA processing

31 March 2020

1 reference

High frequency trans-splicing in a cell line producing spliced and polyadenylated RNA polymerase I transcripts from an rDNA-myc chimeric gene

31 March 2020

1 reference

Naturally occurring heterologous trans-splicing of adenovirus RNA with host cellular transcripts during infection

31 March 2020

1 reference

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

31 March 2020

1 reference

Distribution of NF-kappaB-binding sites across human chromosome 22

31 March 2020

1 reference

An abundance of bidirectional promoters in the human genome

31 March 2020

1 reference

Stability and evolution of overlapping genes

31 March 2020

1 reference

Genome-wide assembly and analysis of alternative transcripts in mouse

31 March 2020

1 reference

Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome

31 March 2020

1 reference

Gene Regulation for Higher Cells: A Theory

31 March 2020

1 reference

Anti-apoptotic function of a microRNA encoded by the HSV-1 latency-associated transcript

31 March 2020

1 reference

Ribo-gnome: the big world of small RNAs

31 March 2020

1 reference

Small regulatory RNAs in mammals

31 March 2020

1 reference

31 March 2020

1 reference

An abundance of RNA regulators

31 March 2020

1 reference

Non-coding-RNA regulators of RNA polymerase II transcription

31 March 2020

1 reference

Eukaryotic regulatory RNAs: an answer to the 'genome complexity' conundrum

31 March 2020

1 reference

RNA regulation: a new genetics?

31 March 2020

1 reference

Introns: evolution and function

31 March 2020

1 reference

Non-coding RNAs: the architects of eukaryotic complexity

31 March 2020

1 reference

Challenging the dogma: the hidden layer of non‐protein‐coding RNAs in complex organisms

31 March 2020

1 reference

31 March 2020

Genomics of microRNA.

1 reference

31 March 2020

1 reference

MicroRNAs: genomics, biogenesis, mechanism, and function

31 March 2020

1 reference

Biogenesis of small nucleolar ribonucleoproteins

31 March 2020

1 reference

Genome-wide analyses of two families of snoRNA genes from Drosophila melanogaster, demonstrating the extensive utilization of introns for coding of snoRNAs

31 March 2020

1 reference

Identification of mammalian microRNA host genes and transcription units

31 March 2020

1 reference

Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes

31 March 2020

1 reference

Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray

31 March 2020

1 reference

Combinatorial microRNA target predictions

31 March 2020

1 reference

Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets

31 March 2020

1 reference

Prediction of mammalian microRNA targets

31 March 2020

1 reference

Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals

31 March 2020

1 reference

Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs

31 March 2020

1 reference

The widespread impact of mammalian MicroRNAs on mRNA repression and evolution

31 March 2020

1 reference

An RNA gene expressed during cortical development evolved rapidly in humans

31 March 2020

1 reference

A large noncoding RNA is a marker for murine hepatocellular carcinomas and a spectrum of human carcinomas

31 March 2020

1 reference

A noncoding RNA is a potential marker of cell fate during mammary gland development

31 March 2020

1 reference

A strategy for probing the function of noncoding RNAs finds a repressor of NFAT

31 March 2020

1 reference

Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax

31 March 2020

1 reference

On a chromosome far, far away: LCRs and gene expression

31 March 2020

1 reference

31 March 2020

Locus control regions

1 reference

How imprinting centres work

31 March 2020

1 reference

Globalisation reaches gene regulation: the case for vertebrate limb development.

31 March 2020

1 reference

The HS2 enhancer of the beta-globin locus control region initiates synthesis of non-coding, polyadenylated RNAs independent of a cis-linked globin promoter

31 March 2020

1 reference

Chromatin remodeling and extragenic transcription at the MHC class II locus control region.

31 March 2020

1 reference

Intergenic transcription and transinduction of the human beta-globin locus

31 March 2020

1 reference

The influence of non-coding RNAs on allele-specific gene expression in mammals

31 March 2020

1 reference

The non-coding Air RNA is required for silencing autosomal imprinted genes

31 March 2020

1 reference

Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes

31 March 2020

1 reference

Locus control region transcription plays an active role in long-range gene activation

31 March 2020

1 reference

HS2 enhancer function is blocked by a transcriptional terminator inserted between the enhancer and the promoter

31 March 2020

1 reference

Imprinting mechanisms--it only takes two.

31 March 2020

1 reference

Properties of overlapping genes are conserved across microbial genomes

31 March 2020

1 reference

Genome-wide analysis of coordinate expression and evolution of human cis-encoded sense-antisense transcripts

31 March 2020

1 reference

Transcriptional collision between convergent genes in budding yeast.

31 March 2020

1 reference

Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation

31 March 2020

1 reference

Antisense WT1 transcription parallels sense mRNA and protein expression in fetal kidney and can elevate protein levels in vitro.

31 March 2020

1 reference

Evolution of overlapping genes

31 March 2020

1 reference

SNPs in the promoter of a B cell-specific antisense transcript, SAS-ZFAT, determine susceptibility to autoimmune thyroid disease

31 March 2020

1 reference

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

31 March 2020

1 reference

The metabolism of a poly(A) minus mRNA fraction in HeLa cells.

31 March 2020

1 reference

Sequence complexity of heterogeneous nuclear RNA in sea urchin embryos

31 March 2020

1 reference

Sequence complexity of nuclear and messenger RNA in HeLa cells

31 March 2020

1 reference

Satellite DNA is transcribed on lampbrush chromosomes

31 March 2020

1 reference

Large Heterogeneous Nuclear Ribonucleic Acid Has Three Times as Many 5′ Caps as Polyadenylic Acid Segments, and Most Caps Do Not Enter Polyribosomes

31 March 2020

1 reference

RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

31 March 2020

1 reference

Empirical analysis of transcriptional activity in the Arabidopsis genome

31 March 2020

1 reference

A gene expression map for the euchromatic genome of Drosophila melanogaster.

31 March 2020

1 reference

Global identification of human transcribed sequences with genome tiling arrays

31 March 2020

1 reference

Genome-wide transcription analyses in rice using tiling microarrays

31 March 2020

1 reference

The transcriptome of the sea urchin embryo.

31 March 2020

1 reference

A high-resolution map of transcription in the yeast genome

31 March 2020

1 reference

Large-scale transcriptional activity in chromosomes 21 and 22

31 March 2020

1 reference

The transcriptional activity of human Chromosome 22

31 March 2020

1 reference

Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage

31 March 2020

1 reference

Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation

31 March 2020

1 reference

Identifying novel transcripts and novel genes in the human genome by using novel SAGE tags

31 March 2020

1 reference

Using the transcriptome to annotate the genome

31 March 2020

1 reference

MicroRNAs and other tiny endogenous RNAs in C. elegans

31 March 2020

1 reference

Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression

31 March 2020

1 reference

Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans

31 March 2020

1 reference

Elucidation of the small RNA component of the transcriptome

31 March 2020

1 reference

A novel class of small RNAs bind to MILI protein in mouse testes

31 March 2020

1 reference

A germline-specific class of small RNAs binds mammalian Piwi proteins

31 March 2020

1 reference

A novel class of small RNAs in mouse spermatogenic cells

31 March 2020

1 reference

Characterization of the piRNA Complex from Rat Testes

31 March 2020

1 reference

Identification and characterization of two novel classes of small RNAs in the mouse germline: retrotransposon-derived siRNAs in oocytes and germline small RNAs in testes

31 March 2020

1 reference

An atlas of human gene expression from massively parallel signature sequencing (MPSS).

31 March 2020

1 reference

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

31 March 2020

1 reference

A high-resolution map of active promoters in the human genome

31 March 2020

1 reference

A global map of p53 transcription-factor binding sites in the human genome

31 March 2020

1 reference

Serial analysis of gene expression

31 March 2020

1 reference

Emerging technologies in DNA sequencing

31 March 2020

1 reference

Microarray expression technology: from start to finish

31 March 2020

1 reference

Beyond expression profiling: next generation uses of high density oligonucleotide arrays

31 March 2020

1 reference

Applications of DNA tiling arrays for whole-genome analysis

31 March 2020

1 reference

The UCSC Genome Browser Database

31 March 2020

1 reference

The human genome browser at UCSC

31 March 2020

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17486121

31 March 2020

Identifiers

2 references

30 April 2017

Consolidated OpenCitations Corpus – April 2017

Dimensions Publication ID

1001524

1025632491

0 references

1001524

1 reference

Consolidated OpenCitations Corpus – April 2017

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=17486121

2 references

30 April 2017

Consolidated OpenCitations Corpus – April 2017