Quantifying information transfer by protein domains: analysis of the Fyn SH2 domain structure (Q30157500)

12 October 2017

Quantifying information transfer by protein domains: analysis of the Fyn SH2 domain structure (English)

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12 October 2017

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12 October 2017

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12 October 2017

Jesper Ferkinghoff-Borg

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object named as

Jesper Ferkinghoff-Borg

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12 October 2017

Francois Stricher

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12 October 2017

Luis Serrano

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12 October 2017

Frederic Rousseau

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12 October 2017

8 October 2008

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12 October 2017

BMC Structural Biology

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12 October 2017

8

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12 October 2017

43

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https://scigraph.springernature.com/pub.10.1186/1472-6807-8-43

12 October 2017

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3 June 2018

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3 June 2018

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3 June 2018

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Crystallography for protein kinase drug design: PKA and SRC case studies

3 June 2018

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3 June 2018

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Prediction of water and metal binding sites and their affinities by using the Fold-X force field

3 June 2018

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3 June 2018

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A systems biology perspective on protein structural dynamics and signal transduction

3 June 2018

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Making optimal use of empirical energy functions: force-field parameterization in crystal space

3 June 2018

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Is allostery an intrinsic property of all dynamic proteins?

3 June 2018

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Ligand-dependent dynamics and intramolecular signaling in a PDZ domain

3 June 2018

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Allosteric determinants in guanine nucleotide-binding proteins

3 June 2018

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Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

3 June 2018

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A camelid antibody fragment inhibits the formation of amyloid fibrils by human lysozyme

3 June 2018

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Assembly of Cell Regulatory Systems Through Protein Interaction Domains

3 June 2018

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Evolutionarily conserved networks of residues mediate allosteric communication in proteins

3 June 2018

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The protein kinase complement of the human genome

3 June 2018

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Molecular recognition by SH2 domains

3 June 2018

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SH3-SH2 domain orientation in Src kinases: NMR studies of Fyn.

3 June 2018

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Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations

3 June 2018

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Extending the accuracy limits of prediction for side-chain conformations

3 June 2018

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Dynamic coupling between the SH2 and SH3 domains of c-Src and Hck underlies their inactivation by C-terminal tyrosine phosphorylation

3 June 2018

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The role of the Src homology 3-Src homology 2 interface in the regulation of Src kinases

3 June 2018

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Can allosteric regulation be predicted from structure?

3 June 2018

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A dynamic model for the allosteric mechanism of GroEL

3 June 2018

1 reference

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Nuclear localization and cell cycle-specific expression of CtIP, a protein that associates with the BRCA1 tumor suppressor

3 June 2018

1 reference

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Clustering gene expression patterns

3 June 2018

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Evolutionarily conserved pathways of energetic connectivity in protein families

3 June 2018

1 reference

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The propagation of binding interactions to remote sites in proteins: analysis of the binding of the monoclonal antibody D1.3 to lysozyme

3 June 2018

1 reference

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Fyn, a Src family tyrosine kinase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

The structural distribution of cooperative interactions in proteins: analysis of the native state ensemble

3 June 2018

1 reference

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X-ray crystallography and NMR reveal complementary views of structure and dynamics

3 June 2018

1 reference

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The SH2 domain from the tyrosine kinase Fyn in complex with a phosphotyrosyl peptide reveals insights into domain stability and binding specificity

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

Molecular switch in signal transduction: reaction paths of the conformational changes in ras p21.

3 June 2018

1 reference

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Modular peptide recognition domains in eukaryotic signaling

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

Crystal structure of the Src family tyrosine kinase Hck

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

Three-dimensional structure of the tyrosine kinase c-Src

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

Covariation of residues in the homeodomain sequence family

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

Exploring the limits of precision and accuracy of protein structures determined by nuclear magnetic resonance spectroscopy.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

WHAT IF: a molecular modeling and drug design program

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

SH2 and SH3 domains: elements that control interactions of cytoplasmic signaling proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

Solution structure of the SH3 domain of Src and identification of its ligand-binding site

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

Using information theory to search for co-evolving residues in proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

Intramolecular signaling pathways revealed by modeling anisotropic thermal diffusion

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

Determination of protein structures consistent with NMR order parameters

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

Structural determinants of allosteric ligand activation in RXR heterodimers.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2585567

Exploring the dynamic information content of a protein NMR structure: comparison of a molecular dynamics simulation with the NMR and X-ray structures of Escherichia coli ribonuclease HI

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18842137

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1472-6807-8-43

1 reference

Dimensions Publication ID

12 October 2017

0 references

1 reference

12 October 2017

1 reference