Exploring the impact of polyproline II (PII) conformational bias on the binding of peptides to the SEM-5 SH3 domain (Q30157656)

16 August 2017

Exploring the impact of polyproline II (PII) conformational bias on the binding of peptides to the SEM-5 SH3 domain (English)

1 reference

16 August 2017

0 references

1 reference

Steven T Whitten

1

1 reference

16 August 2017

Huan-Wang Yang

series ordinal

2

1 reference

16 August 2017

Robert O Fox

series ordinal

3

1 reference

16 August 2017

Vincent J Hilser

series ordinal

4

1 reference

16 August 2017

1 July 2008

1 reference

16 August 2017

1 reference

16 August 2017

17

1 reference

16 August 2017

7

1 reference

16 August 2017

1200-1211

1 reference

PII structure in the model peptides for unfolded proteins: studies on ubiquitin fragments and several alanine-rich peptides containing QQQ, SSS, FFF, and VVV.

16 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Polyproline II propensities from GGXGG peptides reveal an anticorrelation with beta-sheet scales

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Thermodynamics of binding to SH3 domains: the energetic impact of polyproline II (PII) helix formation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Polyproline II helix conformation in a proline-rich environment: a theoretical study

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Stereochemistry of polypeptide chain configurations

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

The pentapeptide GGAGG has PII conformation.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

An electronic effect on protein structure.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

The effect of the polyproline II (PPII) conformation on the denatured state entropy.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

A simple model for polyproline II structure in unfolded states of alanine-based peptides

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Polyproline II structure in a sequence of seven alanine residues.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Polyproline II helical structure in protein unfolded states: lysine peptides revisited

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

The penultimate rotamer library

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

The role of PII conformations in the calculation of peptide fractional helix content

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Energetics of hydrogen bonding in proteins: a model compound study

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Structure based prediction of protein folding intermediates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Structural determinants of peptide-binding orientation and of sequence specificity in SH3 domains

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Conformation of Polypeptides and Proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Temperature dependence of the hydrophobic interaction in protein folding

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Reassessment of the electronic circular dichroism criteria for random coil conformations of poly(L-lysine) and the implications for protein folding and denaturation studies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Influence of proline residues on protein conformation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Molecular basis of co-operativity in protein folding. III. Structural identification of cooperative folding units and folding intermediates

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Thermodynamics of structural stability and cooperative folding behavior in proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Areas, volumes, packing and protein structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Tuna cytochrome c at 2.0 A resolution. III. Coordinate optimization and comparison of structures

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Short sequences of non-proline residues can adopt the polyproline II helical conformation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Stable conformations of tripeptides in aqueous solution studied by UV circular dichroism spectroscopy

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Tripeptides adopt stable structures in water. A combined polarized visible Raman, FTIR, and VCD spectroscopy study

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Estimation of changes in side chain configurational entropy in binding and folding: general methods and application to helix formation.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2441998

Thermodynamic mechanism and consequences of the polyproline II (PII) structural bias in the denatured states of proteins

26 November 2018

1 reference

12 December 2020

Steric structure of L-proline oligopeptides. II. Far-ultraviolet absorption spectra and optical rotations of L-proline oligopeptides

1 reference

12 December 2020

New chain conformations of poly(glutamic acid) and polylysine

1 reference

12 December 2020

Nuclear magnetic resonance evidence for cis-peptide bonds in proline oligomers

1 reference

12 December 2020

Effwct of temperature on the circular dichroism spectra of polypeptides in the extended state

1 reference

12 December 2020

Critical chain length for polyproline-II structure formation in H-Gly-(Pro)n-OH

1 reference

12 December 2020

Prediction of the folding of short polypeptide segments by uniform conformational sampling

1 reference

12 December 2020

Calibration of effective van der Waals atomic contact radii for proteins and peptides

1 reference

12 December 2020

Vibrational circular dichroism spectra of unblocked proline oligomers

1 reference

12 December 2020

Reassessment of the random coil conformation: vibrational CD study of proline oligopeptides and related polypeptides

1 reference

12 December 2020

Modelling multiple disulphide loop containing polypeptides by random conformation generation. The test cases of alpha-conotoxin GI and endothelin I

1 reference

12 December 2020

The heat capacity of proteins

1 reference

12 December 2020

The magnitude of the backbone conformational entropy change in protein folding

1 reference

12 December 2020

Residual structure in unfolded proteins revealed by Raman optical activity

1 reference

12 December 2020

Structure-based thermodynamic scale of alpha-helix propensities in amino acids

1 reference

12 December 2020

Molecular dynamics simulations of polypeptide conformations in water: A comparison of alpha, beta, and poly(pro)II conformations

1 reference

12 December 2020

Identifiers

DOI

10.1110/PS.033647.107

1 reference

16 August 2017

1 reference

16 August 2017

PubMed publication ID

18577755

1 reference