Polyproline II helix conformation in a proline-rich environment: a theoretical study (Q34184748)

31 July 2017

title

Polyproline II helix conformation in a proline-rich environment: a theoretical study (English)

1 reference

31 July 2017

5

Harold A Scheraga

1 reference

31 July 2017

Jorge A Vila

1

1 reference

31 July 2017

Héctor A Baldoni

series ordinal

2

1 reference

31 July 2017

Daniel R Ripoll

series ordinal

3

1 reference

31 July 2017

Avijit Ghosh

series ordinal

4

1 reference

31 July 2017

language of work or name

English

0 references

publication date

1 February 2004

1 reference

31 July 2017

1 reference

31 July 2017

volume

86

1 reference

31 July 2017

issue

2

1 reference

31 July 2017

page(s)

731-742

1 reference

Stereochemistry of polypeptide chain configurations

31 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

The effect of the polyproline II (PPII) conformation on the denatured state entropy.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Structural composition of betaI- and betaII-proteins

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Is polyproline II a major backbone conformation in unfolded proteins?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

A simple model for polyproline II structure in unfolded states of alanine-based peptides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Effective Born radii in the generalized Born approximation: the importance of being perfect

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

An atomically detailed study of the folding pathways of protein A with the stochastic difference equation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Polyproline II structure in a sequence of seven alanine residues.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Polyproline II helical structure in protein unfolded states: lysine peptides revisited

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Host-guest study of left-handed polyproline II helix formation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Use of chemical shifts in macromolecular structure determination

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Influence of lysine content and pH on the stability of alanine-based copolypeptides

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

C alpha and C beta carbon-13 chemical shifts in proteins from an empirical database

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

A survey of left-handed polyproline II helices

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Role of hydrophobicity and solvent-mediated charge-charge interactions in stabilizing alpha-helices

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Coupling between folding and ionization equilibria: effects of pH on the conformational preferences of polypeptides.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Electrostatic calculations of amino acid titration and electron transfer, Q-AQB-->QAQ-B, in the reaction center

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Structure of beta-poly-L-alanine: refined atomic co-ordinates for an anti-parallel beta-pleated sheet.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Calculation of conformational properties of oligomers of L-proline.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

On the multiple-minima problem in the conformational analysis of polypeptides. II. An electrostatically driven Monte Carlo method--tests on poly(L-alanine).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

pKa's of ionizable groups in proteins: atomic detail from a continuum electrostatic model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Empirical solvation models can be used to differentiate native from near-native conformations of bovine pancreatic trypsin inhibitor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Theory of the Cooperative Transition between Two Ordered Conformations of Poly(L-proline). III. Molecular Theory in the Presence of Solvent

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Theory of the Cooperative Transition between Two Ordered Conformations of Poly(L-proline). II. Molecular Theory in the Absence of Solvent

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Conformational analysis of the 20 naturally occurring amino acid residues using ECEPP

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Consideration of the possibility that the slow step in protein denaturation reactions is due to cis-trans isomerism of proline residues

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Unblocked statistical-coil tetrapeptides in aqueous solution: quantum-chemical computation of the carbon-13 NMR chemical shifts

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

A software tool for the prediction of Xaa-Pro peptide bond conformations in proteins based on 13C chemical shift statistics

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Carbon-13 NMR shielding in the twenty common amino acids: comparisons with experimental results in proteins

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

On the pH dependence of protein stability.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Conformational properties of poly-L-proline form II in dilute solution.

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1303923

Density-functional thermochemistry. III. The role of exact exchange

28 October 2018

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Structure of Poly-L-Proline

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Nuclear magnetic resonance evidence for cis-peptide bonds in proline oligomers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Multiple-site titration and molecular modeling: two rapid methods for computing energies and forces for ionizable groups in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Comparison of helix stabilities of poly-L-lysine, poly-L-ornithine, and poly(L-diaminobutyric acid)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Parametrized Models of Aqueous Free Energies of Solvation Based on Pairwise Descreening of Solute Atomic Charges from a Dielectric Medium

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Contact Electron‐Spin Coupling of Nuclear Magnetic Moments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Polyproline II helix is a key structural motif of the elastic PEVK segment of titin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Structural requirements and thermodynamics of the interaction of proline peptides with profilin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Empirical correlation between protein backbone conformation and C.alpha. and C.beta. 13C nuclear magnetic resonance chemical shifts

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Molecular dynamics simulations of polypeptide conformations in water: A comparison of alpha, beta, and poly(pro)II conformations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Calculation of the Characteristic Ratio of Randomly Coiled Poly(L-proline)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

New chain conformations of poly(glutamic acid) and polylysine

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Theory and applications of the generalized Born solvation model in macromolecular simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Unblocked statistical-coil tetrapeptides and pentapeptides in aqueous solution: a theoretical study

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

On the calculation of pKas in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Stability of cis, trans, and nonplanar peptide groups

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0006-3495%2804%2974151-X

Left-handed polyproline II helix formation is (very) locally driven.

7 January 2021

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/14747311

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/S0006-3495(04)74151-X

1 reference

31 July 2017

1 reference

31 July 2017

1 reference