DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies (Q30209751)

7 November 2017

DegePrime, a program for degenerate primer design for broad-taxonomic-range PCR in microbial ecology studies (English)

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7 November 2017

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8

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7 November 2017

7

Lars Engstrand

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7 November 2017

5

Mathilda Lindberg

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7 November 2017

1

Luisa W Hugerth

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7 November 2017

6

Sandra Rodin

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7 November 2017

Hugo A Wefer

2

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7 November 2017

Sverker Lundin

series ordinal

3

1 reference

7 November 2017

Hedvig E Jakobsson

series ordinal

4

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7 November 2017

language of work or name

English

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publication date

13 June 2014

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Applied and Environmental Microbiology

7 November 2017

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7 November 2017

80

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7 November 2017

16

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7 November 2017

5116-5123

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maintained by WikiProject

7 November 2017

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Decreased gut microbiota diversity, delayed Bacteroidetes colonisation and reduced Th1 responses in infants delivered by caesarean section

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

A biomolecular isolation framework for eco-systems biology.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Freshwater bacterioplankton richness in oligotrophic lakes depends on nutrient availability rather than on species-area relationships

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Low diversity of the gut microbiota in infants with atopic eczema

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Search and clustering orders of magnitude faster than BLAST

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Increased throughput by parallelization of library preparation for massive sequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Metagenomic study of the oral microbiota by Illumina high-throughput sequencing.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Generations of sequencing technologies

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Comparative analysis of human gut microbiota by barcoded pyrosequencing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Microbial diversity in the deep sea and the underexplored "rare biosphere"

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

The degenerate primer design problem.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Exploring prokaryotic diversity in the genomic era

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Dynamics of bacterial community composition and activity during a mesocosm diatom bloom

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

The impact of Crohn's disease genes on healthy human gut microbiota: a pilot study

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

Bacterial community composition in the water column of a lake formed by a former uranium open pit mine.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4135748

26 November 2018

Identifiers

DOI

10.1128/AEM.01403-14

1 reference

7 November 2017

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7 November 2017

PubMed publication ID

24928874

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