Knowledge-based potential functions in protein design. (Q30331402)

18 June 2017

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title

Knowledge-based potential functions in protein design. (English)

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18 June 2017

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William P Russ

1

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18 June 2017

Rama Ranganathan

series ordinal

2

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18 June 2017

publication date

1 August 2002

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Current Opinion in Structural Biology

18 June 2017

published in

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18 June 2017

volume

12

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18 June 2017

issue

4

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18 June 2017

page(s)

447-452

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Principles that govern the folding of protein chains

18 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

A hot spot of binding energy in a hormone-receptor interface

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Structural plasticity in a remodeled protein-protein interface

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

X-ray structure of the GCN4 leucine zipper, a two-stranded, parallel coiled coil

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Measurement of interhelical electrostatic interactions in the GCN4 leucine zipper

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

De novo protein design: fully automated sequence selection

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

High-resolution protein design with backbone freedom

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Design and synthesis of a globin fold

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Protein topology and stability define the space of allowed sequences.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Designing protein beta-sheet surfaces by Z-score optimization.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Enzyme-like proteins by computational design

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

The beta-beta-alpha fold: explorations in sequence space

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Statistical theory of combinatorial libraries of folding proteins: energetic discrimination of a target structure

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

The immunological evolution of catalysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Converting trypsin to chymotrypsin: the role of surface loops

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Structural origins of substrate discrimination in trypsin and chymotrypsin

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

The propagation of binding interactions to remote sites in proteins: analysis of the binding of the monoclonal antibody D1.3 to lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

The linkage between protein folding and functional cooperativity: two sides of the same coin?

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Global changes in amide hydrogen exchange rates for a protein antigen in complex with three different antibodies.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Potential use of additivity of mutational effects in simplifying protein engineering

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Thermodynamic and structural compensation in "size-switch" core repacking variants of bacteriophage T4 lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Evolutionarily conserved pathways of energetic connectivity in protein families

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

The design of a hyperstable mutant of the Abp1p SH3 domain by sequence alignment analysis

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Semirational design of active tumor suppressor p53 DNA binding domain with enhanced stability

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Design of highly stable functional GroEL minichaperones.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

From DNA sequence to improved functionality: using protein sequence comparisons to rapidly design a thermostable consensus phytase

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

The consensus concept for thermostability engineering of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Engineering proteins for thermostability: the use of sequence alignments versus rational design and directed evolution

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Structural analysis of WW domains and design of a WW prototype

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Conformation of amino acid side-chains in proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Achieving stability and conformational specificity in designed proteins via binary patterning

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Protein design by binary patterning of polar and nonpolar amino acids

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Searching sequence space for protein catalysts

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Reverse engineering the (beta/alpha )8 barrel fold

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Conversion of phospholamban into a soluble pentameric helical bundle

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Toward a high-resolution structure of phospholamban: design of soluble transmembrane domain mutants

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Solvation energy in protein folding and binding

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Pairwise calculation of protein solvent-accessible surface areas

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Measurement of the β-sheet-forming propensities of amino acids

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

A thermodynamic scale for the beta-sheet forming tendencies of the amino acids.

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Stability of alpha-helices

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Protein alchemy: changing beta-sheet into alpha-helix

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Understanding the sequence determinants of conformational switching using protein design

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Reengineering granulocyte colony-stimulating factor for enhanced stability

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Accurate computer-based design of a new backbone conformation in the second turn of protein L

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Assessment of pseudo-energy potentials by the best-five test: a new use of the three-dimensional profiles of proteins

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Protein design automation

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Computer-based redesign of a protein folding pathway

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Conversion of monomeric protein L to an obligate dimer by computational protein design

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

The role of backbone flexibility in the accommodation of variants that repack the core of T4 lysozyme

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

De novo amyloid proteins from designed combinatorial libraries

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

Cooperative thermal denaturation of proteins designed by binary patterning of polar and nonpolar amino acids

1 reference

https://api.crossref.org/works/10.1016%2FS0959-440X%2802%2900346-9

7 January 2021

10.1016/S0959-440X(02)00346-9

Identifiers

DOI

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18 June 2017

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