Imprint of evolution on protein structures. (Q30339016)

16 August 2017

Imprint of evolution on protein structures. (English)

1 reference

16 August 2017

0 references

Guido Tiana

1

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Nikolay V. Dokholyan

object named as

Nikolay V Dokholyan

series ordinal

3

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Eugene I. Shakhnovich

series ordinal

4

object named as

Eugene I Shakhnovich

1 reference

16 August 2017

2

Boris E Shakhnovich

1 reference

PMCID

365708

16 August 2017

language of work or name

English

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publication date

17 February 2004

1 reference

Proceedings of the National Academy of Sciences of the United States of America

16 August 2017

1 reference

16 August 2017

101

1 reference

16 August 2017

9

1 reference

16 August 2017

2846-2851

1 reference

ELISA: structure-function inferences based on statistically significant and evolutionarily inspired observations

16 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Natural selection of more designable folds: a mechanism for thermophilic adaptation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

The structure of the protein universe and genome evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Expanding protein universe and its origin from the biological Big Bang

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Roles of mutation and recombination in the evolution of protein thermodynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

From knowledge-based potentials to combinatorial lead design in silico

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

The natural history of protein domains

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Multiple protein folding nuclei and the transition state ensemble in two-state proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Protein folding theory: from lattice to all-atom models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Advances in structural genomics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

How evolution makes proteins fold quickly

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Statistical mechanics of simple models of protein folding and design

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Symmetry and the energy landscapes of biomolecules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Comparing folding codes for proteins and polymers

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Why are some proteins structures so common?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

A new approach to the design of stable proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Boltzmann-like statistics of protein architectures. Origins and consequences.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Evolution-like selection of fast-folding model proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

20 June 2018

How does a protein fold?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Why do globular proteins fit the limited set of folding patterns?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Kinetics of protein folding. A lattice model study of the requirements for folding to the native state.

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0306638101

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0306638101

Protein design: a perspective from simple tractable models

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0306638101

Specific nucleus as the transition state for protein folding: evidence from the lattice model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0306638101

Emergence of Preferred Structures in a Simple Model of Protein Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0306638101

Protein folding mechanisms and the multidimensional folding funnel.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=365708

Protein family and fold occurrence in genomes: power-law behaviour and evolutionary model

26 November 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0306638101

The distribution of structures in evolving protein populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0306638101

Proteins with selected sequences fold into unique native conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0306638101

Structural determinant of protein designability

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0306638101

21 January 2018

Identifiers

DOI

10.1073/PNAS.0306638101

1 reference

16 August 2017

0 references

1 reference

16 August 2017

1 reference

PMCID

365708