On the origin and highly likely completeness of single-domain protein structures. (Q30352967)

17 November 2017

On the origin and highly likely completeness of single-domain protein structures. (English)

1 reference

17 November 2017

5

Jeffrey Skolnick

1 reference

17 November 2017

Eugene I. Shakhnovich

series ordinal

4

object named as

Eugene Shakhnovich

1 reference

17 November 2017

Yang Zhang

1

1 reference

17 November 2017

Isaac A Hubner

series ordinal

2

1 reference

17 November 2017

Adrian K Arakaki

series ordinal

3

1 reference

17 November 2017

language of work or name

English

0 references

publication date

14 February 2006

1 reference

Proceedings of the National Academy of Sciences of the United States of America

17 November 2017

1 reference

17 November 2017

103

1 reference

17 November 2017

8

1 reference

17 November 2017

2605-2610

1 reference

Nucleation and the transition state of the SH3 domain

17 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

TM-align: a protein structure alignment algorithm based on the TM-score

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Global mapping of the protein structure space and application in structure-based inference of protein function.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

The protein structure prediction problem could be solved using the current PDB library

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Scoring function for automated assessment of protein structure template quality

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Geometry and symmetry presculpt the free-energy landscape of proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Automated structure prediction of weakly homologous proteins on a genomic scale

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

SPICKER: a clustering approach to identify near-native protein folds

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Large-scale assessment of the utility of low-resolution protein structures for biochemical function assignment.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Automated prediction of CASP-5 structures using the Robetta server.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

TOUCHSTONE: a unified approach to protein structure prediction.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Expanding protein universe and its origin from the biological Big Bang

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Structuring the universe of proteins.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

3 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Retrostructural analysis of metalloproteins: application to the design of a minimal model for diiron proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

An alternative view of protein fold space

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Evolution of protein function, from a structural perspective

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

The protein threading problem with sequence amino acid interaction preferences is NP-complete

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Principles that govern the folding of protein chains

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

The classification and origins of protein folding patterns

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

A search for the most stable folds of protein chains

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Protein folding. Effect of packing density on chain conformation

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Construction of new ligand binding sites in proteins of known structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

Identification and optimization of protein domains for NMR studies.

3 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509379103

Quantifying the similarities within fold space

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509379103

The PDB is a covering set of small protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509379103

Implications of structural genomics target selection strategies: Pfam5000, whole genome, and random approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509379103

An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509379103

Design of a calcium-binding protein with desired structure in a cell adhesion molecule.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509379103

A practical and robust sequence search strategy for structural genomics target selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509379103

Ten thousand interactions for the molecular biologist

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0509379103

TASSER: an automated method for the prediction of protein tertiary structures in CASP6.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

CAFASP3: The third critical assessment of fully automated structure prediction methods

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1413790

The folding thermodynamics and kinetics of crambin using an all-atom Monte Carlo simulation

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16478803

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0509379103

1 reference

17 November 2017

0 references

1 reference

17 November 2017

1 reference