Structural determinants of the rate of protein evolution in yeast. (Q30354999)

20 June 2017

Structural determinants of the rate of protein evolution in yeast. (English)

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20 June 2017

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D Allan Drummond

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20 June 2017

3

Frances H Arnold

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20 June 2017

Jesse D Bloom

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Claus O. Wilke

object named as

Claus O Wilke

series ordinal

4

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publication date

16 June 2006

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Molecular Biology and Evolution

20 June 2017

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20 June 2017

23

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20 June 2017

9

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20 June 2017

1751-1761

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Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks

20 June 2017

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Basic local alignment search tool

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Protein stability promotes evolvability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Thermodynamic prediction of protein neutrality

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Evolutionary rate heterogeneity in proteins with long disordered regions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Solvent accessibility and purifying selection within proteins of Escherichia coli and Salmonella enterica.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

The pattern of amino acid replacements in alpha/beta-barrels

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Why highly expressed proteins evolve slowly

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

A single determinant dominates the rate of yeast protein evolution

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Natural selection of more designable folds: a mechanism for thermophilic adaptation

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Evolutionary rate in the protein interaction network

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Why are some proteins structures so common?

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Molecular evolution in large genetic networks: does connectivity equal constraint?

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Protein dispensability and rate of evolution

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Dissecting the regulatory circuitry of a eukaryotic genome

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Do essential genes evolve slowly?

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Enumerating Designing Sequences in the HP Model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Analysis of the yeast transcriptome with structural and functional categories: characterizing highly expressed proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Essential genes are more evolutionarily conserved than are nonessential genes in bacteria

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Protein topology and stability define the space of allowed sequences.

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Statistical theory for protein combinatorial libraries. Packing interactions, backbone flexibility, and the sequence variability of a main-chain structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Context-dependent optimal substitution matrices

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

The designability hypothesis and protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Thoroughly sampling sequence space: large-scale protein design of structural ensembles

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Emergence of Preferred Structures in a Simple Model of Protein Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Synonymous codon usage, accuracy of translation, and gene length in Caenorhabditis elegans.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Quantification of protein surfaces, volumes and atom-atom contacts using a constrained Voronoi procedure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Emergence of highly designable protein-backbone conformations in an off-lattice model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Microarray and EST database estimates of mRNA expression levels differ: the protein length versus expression curve for C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

SCOP: a structural classification of proteins database for the investigation of sequences and structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Bacteriophage lambda cro mutations: effects on activity and intracellular degradation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Genomic function (communication arising): Rate of evolution and gene dispensability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Protein structure and evolutionary history determine sequence space topology

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Protein design: a perspective from simple tractable models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Combining protein evolution and secondary structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Imprint of evolution on protein structures.

21 January 2018

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https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Computational method to reduce the search space for directed protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Detecting putative orthologs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Functional genomic analysis of the rates of protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Symmetry and the energy landscapes of biomolecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Comparing folding codes in simple heteropolymer models of protein evolutionary landscape: robustness of the superfunnel paradigm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

PAML: a program package for phylogenetic analysis by maximum likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Significant impact of protein dispensability on the instantaneous rate of protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Statistical theory of combinatorial libraries of folding proteins: energetic discrimination of a target structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Evolutionary Divergence and Convergence in Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Understanding hierarchical protein evolution from first principles 1 1Edited by J. Thornton

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Complete mutagenesis of the HIV-1 protease

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMSL040

Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing

21 January 2018

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1093/MOLBEV/MSL040

On the constancy of the evolutionary rate of cistrons

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1093/MOLBEV/MSL040

Structural determinant of protein designability

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1093/MOLBEV/MSL040

The foldability landscape of model proteins

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1093/MOLBEV/MSL040

Comparative genomics of centrality and essentiality in three eukaryotic protein-interaction networks

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1093/MOLBEV/MSL040

Protein structural influences in rhodopsin evolution

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1093/MOLBEV/MSL040

What determines the rate of sequence evolution?

1 reference

11 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1093/MOLBEV/MSL040

Identifiers

DOI

10.1093/MOLBEV/MSL040

1 reference

20 June 2017

1 reference

PubMed ID

16782762