A three-state prediction of single point mutations on protein stability changes. (Q30368637)

14 November 2017

A three-state prediction of single point mutations on protein stability changes. (English)

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14 November 2017

1

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14 November 2017

Piero Fariselli

2

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Rita Casadio

series ordinal

4

object named as

Rita Casadio

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14 November 2017

Ivan Rossi

3

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14 November 2017

26 March 2008

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14 November 2017

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14 November 2017

9 Suppl 2

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14 November 2017

S6

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https://scigraph.springernature.com/pub.10.1186/1471-2105-9-s2-s6

14 November 2017

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cites work

Structural analysis and prediction of protein mutant stability using distance and torsion potentials: role of secondary structure and solvent accessibility.

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CUPSAT: prediction of protein stability upon point mutations.

3 June 2018

1 reference

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ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323669

I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323669

Distance-scaled, finite ideal-gas reference state improves structure-derived potentials of mean force for structure selection and stability prediction

3 June 2018

1 reference

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Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations

3 June 2018

1 reference

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Are the parameters of various stabilization factors estimated from mutant human lysozymes compatible with other proteins?

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323669

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323669

Prediction of the stability of protein mutants based on structural environment-dependent amino acid substitution and propensity tables

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323669

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

3 June 2018

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Contribution of the hydrophobic effect to protein stability: analysis based on simulations of the Ile-96----Ala mutation in barnase

3 June 2018

1 reference

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Prediction of protein stability changes for single-site mutations using support vector machines

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323669

Predicting protein stability changes from sequences using support vector machines.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323669

A neural-network-based method for predicting protein stability changes upon single point mutations.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323669

Exhaustive mutagenesis in silico: multicoordinate free energy calculations on proteins and peptides

26 November 2018

1 reference

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Predicting free energy contributions to the conformational stability of folded proteins from the residue sequence with radial basis function networks

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2323669

PoPMuSiC, rationally designing point mutations in protein structures

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18387208

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Predicting protein stability changes upon mutation using database-derived potentials: solvent accessibility determines the importance of local versus non-local interactions along the sequence

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18387208

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-9-S2-S6

1 reference

journals/bmcbi/CapriottiFRC08

14 November 2017

1 reference

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1010686880

0 references

Fatcat ID

release_eyssscvydrf3bbgwguylb73rg4

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/eyssscvydrf3bbgwguylb73rg4

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMCID

2323669

1 reference

14 November 2017

1 reference

PMCID

2323669