Denatured-state energy landscapes of a protein structural database reveal the energetic determinants of a framework model for folding. (Q30370558)

30 June 2019

title

Denatured-state energy landscapes of a protein structural database reveal the energetic determinants of a framework model for folding. (English)

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30 June 2019

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Suwei Wang

1

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30 June 2019

Jenny Gu

2

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30 June 2019

Scott A Larson

3

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Steven T Whitten

4

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Vincent J Hilser

5

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language of work or name

English

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publication date

24 June 2008

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Journal of Molecular Biology

published in

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volume

381

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issue

5

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30 June 2019

page(s)

1184-1201

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Side-chain conformations in an unfolded protein: chi1 distributions in denatured hen lysozyme determined by heteronuclear 13C, 15N NMR spectroscopy

cites work

1 reference

12 December 2020

Context-dependence of amino acid residue pairing in antiparallel beta-sheets

1 reference

12 December 2020

Interdomain signaling in a two-domain fragment of the human glucocorticoid receptor

1 reference

12 December 2020

Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm

1 reference

12 December 2020

beta-sheet propensity and its correlation with parameters based on conformation

1 reference

12 December 2020

Binding sites in Escherichia coli dihydrofolate reductase communicate by modulating the conformational ensemble

1 reference

12 December 2020

The structural basis of protein folding and its links with human disease

1 reference

12 December 2020

Thermodynamic propensities of amino acids in the native state ensemble: implications for fold recognition.

1 reference

12 December 2020

Identification of intrinsic order and disorder in the DNA repair protein XPA.

1 reference

12 December 2020

Effects of turn residues in directing the formation of the beta-sheet and in the stability of the beta-sheet.

1 reference

12 December 2020

The protein trinity--linking function and disorder.

1 reference

12 December 2020

What does it mean to be natively unfolded?

1 reference

12 December 2020

Thermodynamic environments in proteins: fundamental determinants of fold specificity

1 reference

12 December 2020

Crystal structure of the glucocorticoid receptor ligand binding domain reveals a novel mode of receptor dimerization and coactivator recognition

1 reference

12 December 2020

Intrinsically unstructured proteins

1 reference

12 December 2020

The expanded denatured state: an ensemble of conformations trapped in a locally encoded topological space

1 reference

12 December 2020

A new perspective on unfolded proteins

1 reference

12 December 2020

Thermodynamics of structural stability and cooperative folding behavior in proteins

1 reference

12 December 2020

Direct access to the cooperative substructure of proteins and the protein ensemble via cold denaturation

1 reference

12 December 2020

Determination of an ensemble of structures representing the denatured state of the bovine acyl-coenzyme a binding protein

1 reference

12 December 2020

Preformed structural elements feature in partner recognition by intrinsically unstructured proteins

1 reference

12 December 2020

Analysis of the "thermodynamic information content" of a Homo sapiens structural database reveals hierarchical thermodynamic organization

1 reference

12 December 2020

Protein aggregation and neurodegenerative disease

1 reference

12 December 2020

Random-coil behavior and the dimensions of chemically unfolded proteins

1 reference

12 December 2020

Natively disordered proteins: functions and predictions

1 reference

12 December 2020

Local conformational fluctuations can modulate the coupling between proton binding and global structural transitions in proteins

1 reference

12 December 2020

Simulation and experiment conspire to reveal cryptic intermediates and a slide from the nucleation-condensation to framework mechanism of folding

1 reference

12 December 2020

Biologically active novel conformational state of botulinum, the most poisonous poison

1 reference

12 December 2020

Ensemble-based signatures of energy propagation in proteins: a new view of an old phenomenon.

1 reference

12 December 2020

Conservation of intrinsic disorder in protein domains and families: II. functions of conserved disorder

1 reference

12 December 2020

Length-dependent prediction of protein intrinsic disorder.

1 reference

12 December 2020

A statistical thermodynamic model of the protein ensemble

1 reference

12 December 2020

Revealing the nature of the native state ensemble through cold denaturation

1 reference

12 December 2020

Analysis of molecular recognition features (MoRFs)

1 reference

12 December 2020

Characterization of molecular recognition features, MoRFs, and their binding partners

1 reference

12 December 2020

Intrinsic disorder as a mechanism to optimize allosteric coupling in proteins

1 reference

12 December 2020

Molecular Principles of the Interactions of Disordered Proteins

1 reference

12 December 2020

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

1 reference

12 December 2020

Exploring the impact of polyproline II (PII) conformational bias on the binding of peptides to the SEM-5 SH3 domain

1 reference

12 December 2020

Denatured states of proteins

1 reference

12 December 2020

Flexibility and Rigidity in Protein Crystals

1 reference

12 December 2020

NMR evidence for an early framework intermediate on the folding pathway of ribonuclease A

1 reference

12 December 2020

Areas, volumes, packing and protein structure

1 reference

12 December 2020

Study of protein dynamics by X-ray diffraction

1 reference

12 December 2020

Local secondary structure in ribonuclease A denatured by guanidine . HCl near 1 degree C

1 reference

12 December 2020

Identification of common molecular subsequences

1 reference

12 December 2020

The heat capacity of proteins

1 reference

12 December 2020

Side-Chain Determinants of .beta.-Sheet Stability

1 reference

12 December 2020

Estimation of changes in side chain configurational entropy in binding and folding: general methods and application to helix formation.

1 reference

12 December 2020

Context is a major determinant of β-sheet propensity

1 reference

12 December 2020

Measurement of the β-sheet-forming propensities of amino acids

1 reference

12 December 2020

Thermodynamic beta-sheet propensities measured using a zinc-finger host peptide.

1 reference

12 December 2020

Knowledge-based protein secondary structure assignment

1 reference

12 December 2020

The magnitude of the backbone conformational entropy change in protein folding

1 reference

12 December 2020

Structure-based calculation of the equilibrium folding pathway of proteins. Correlation with hydrogen exchange protection factors.

1 reference

12 December 2020

Structure-based thermodynamic scale of alpha-helix propensities in amino acids

1 reference

12 December 2020

Instability, unfolding and aggregation of human lysozyme variants underlying amyloid fibrillogenesis

1 reference

12 December 2020

Predicting the equilibrium protein folding pathway: structure-based analysis of staphylococcal nuclease

1 reference

12 December 2020

The structural distribution of cooperative interactions in proteins: analysis of the native state ensemble

1 reference

12 December 2020

10.1016/J.JMB.2008.06.046

Identifiers

DOI

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30 June 2019

PMC publication ID

6583914

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30 June 2019

PubMed publication ID

18616947

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30 June 2019