CONFOLD: Residue-residue contact-guided ab initio protein folding. (Q30374675)

18 October 2017

CONFOLD: Residue-residue contact-guided ab initio protein folding. (English)

1 reference

18 October 2017

0 references

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25974172%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

author name string

Badri Adhikari

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25974172%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Debswapna Bhattacharya

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25974172%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

Renzhi Cao

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25974172%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

language of work or name

English

0 references

publication date

6 June 2015

1 reference

18 October 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25974172%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

volume

83

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25974172%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25974172%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

page(s)

1436-1449

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25974172%20AND%20SRC:MED&resulttype=core&format=json

MetaPSICOV: combining coevolution methods for accurate prediction of contacts and long range hydrogen bonding in proteins.

11 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Improved contact predictions using the recognition of protein like contact patterns

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

PconsFold: improved contact predictions improve protein models

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Automated procedure for contact-map-based protein structure reconstruction.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

FreeContact: fast and free software for protein contact prediction from residue co-evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

De novo structure prediction of globular proteins aided by sequence variation-derived contacts

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Definition and classification of evaluation units for CASP10

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Assessment of CASP10 contact-assisted predictions.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Predicting protein contact map using evolutionary and physical constraints by integer programming

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Evaluation of residue-residue contact prediction in CASP10

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Predicting protein residue-residue contacts using deep networks and boosting

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Computational prediction of secondary and supersecondary structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Putting the pieces together: integrative modeling platform software for structure determination of macromolecular assemblies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Protein 3D structure computed from evolutionary sequence variation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

SPINE X: improving protein secondary structure prediction by multistep learning coupled with prediction of solvent accessible surface area and backbone torsion angles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Evaluation of residue-residue contact predictions in CASP9

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Improving protein structure prediction using multiple sequence-based contact predictions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Optimal contact definition for reconstruction of contact maps

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Defining an essence of structure determining residue contacts in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

NNcon: improved protein contact map prediction using 2D-recursive neural networks

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Reconstruction of 3D structures from protein contact maps

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

The Jpred 3 secondary structure prediction server

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Version 1.2 of the Crystallography and NMR system

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Improved residue contact prediction using support vector machines and a large feature set.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

SCRATCH: a protein structure and structural feature prediction server

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Three-stage prediction of protein beta-sheets by neural networks, alignments and graph algorithms.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

TM-align: a protein structure alignment algorithm based on the TM-score

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Pcons: a neural-network-based consensus predictor that improves fold recognition.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

20 June 2018

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Protein secondary structure prediction based on position-specific scoring matrices

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Recovery of protein structure from contact maps

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Structural properties of protein β-sheets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Influence of proline residues on protein conformation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4509844

Prediction of contact maps with neural networks and correlated mutations.

20 June 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24829

CCMpred--fast and precise prediction of protein residue-residue contacts from correlated mutations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24829

Critical assessment of high-throughput standalone methods for secondary structure prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24829

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24829

Protein structures from distance inequalities.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24829

An efficient newton-like method for molecular mechanics energy minimization of large molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24829

On the Reconstruction of Three-dimensional Protein Structures from Contact Maps

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.24829

Conformational and geometrical properties of beta-sheets in proteins. II. Antiparallel and mixed beta-sheets

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25974172

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

SABmark--a benchmark for sequence alignment that covers the entire known fold space

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25974172

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1002/PROT.24829

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25974172%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25974172%20AND%20SRC:MED&resulttype=core&format=json

11 June 2020

PubMed publication ID

25974172

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25974172%20AND%20SRC:MED&resulttype=core&format=json