Optimal contact definition for reconstruction of contact maps (Q30389746)

17 November 2017

Optimal contact definition for reconstruction of contact maps (English)

1 reference

17 November 2017

1

1 reference

17 November 2017

Rajagopal Sathyapriya

2

1 reference

PMCID

3583236

17 November 2017

Henning Stehr

3

1 reference

PMCID

3583236

17 November 2017

Ioannis Filippis

4

1 reference

PMCID

3583236

17 November 2017

Michael Lappe

5

1 reference

17 November 2017

27 May 2010

1 reference

17 November 2017

1 reference

17 November 2017

11

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17 November 2017

283

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Creative Commons Attribution 2.0 Generic

17 November 2017

start time

27 May 2010

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

exact match

https://scigraph.springernature.com/pub.10.1186/1471-2105-11-283

0 references

cites work

Defining an essence of structure determining residue contacts in proteins

1 reference

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Residue contact-count potentials are as effective as residue-residue contact-type potentials for ranking protein decoys.

20 June 2018

1 reference

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Insights into protein-DNA interactions through structure network analysis

20 June 2018

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Reconstruction of 3D structures from protein contact maps

20 June 2018

1 reference

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A three-state prediction of single point mutations on protein stability changes.

20 June 2018

1 reference

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The pros and cons of predicting protein contact maps.

20 June 2018

1 reference

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20 June 2018

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A topological algorithm for identification of structural domains of proteins.

20 June 2018

1 reference

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Fidelity of the protein structure reconstruction from inter-residue proximity constraints.

20 June 2018

1 reference

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Improved residue contact prediction using support vector machines and a large feature set.

20 June 2018

1 reference

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CASP6 assessment of contact prediction.

20 June 2018

1 reference

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PROFcon: novel prediction of long-range contacts.

20 June 2018

1 reference

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Evaluation of local structure alphabets based on residue burial.

20 June 2018

1 reference

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1001 optimal PDB structure alignments: integer programming methods for finding the maximum contact map overlap.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

Prediction of contact maps by GIOHMMs and recurrent neural networks using lateral propagation from all four cardinal corners.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

Statistical potentials for fold assessment.

20 June 2018

1 reference

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Processing and analysis of CASP3 protein structure predictions

20 June 2018

1 reference

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A neural network based predictor of residue contacts in proteins.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

Recovery of protein structure from contact maps

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

Homology modelling by distance geometry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

The NMR solution structure of intestinal fatty acid-binding protein complexed with palmitate: application of a novel distance geometry algorithm

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

A geometrical constraint approach for reproducing the native backbone conformation of a protein.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

Protein structure comparison by alignment of distance matrices

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

Comparative protein modelling by satisfaction of spatial restraints

20 June 2018

1 reference

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SCOP: a structural classification of proteins database for the investigation of sequences and structures

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

The development of crystallographic enzymology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

Protein structure determination in solution by nuclear magnetic resonance spectroscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

Side-chain clusters in protein structures and their role in protein folding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

A new method for building protein conformations from sequence alignments with homologues of known structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

Sampling and efficiency of metric matrix distance geometry: a novel partial metrization algorithm.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

PDP: protein domain parser.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

Comparison between long-range interactions and contact order in determining the folding rate of two-state proteins: application of long-range order to folding rate prediction.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

Can a pairwise contact potential stabilize native protein folds against decoys obtained by threading?

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3583236

26 November 2018

Identifiers

DOI

10.1186/1471-2105-11-283

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/rhfh2sfmo5dflkzldzzwsndj74

30 July 2022

journals/bmcbi/DuarteSSFL10

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1051524395

0 references

Fatcat ID

release_rhfh2sfmo5dflkzldzzwsndj74

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/rhfh2sfmo5dflkzldzzwsndj74

30 July 2022

https://api.fatcat.wiki/v0/release/rhfh2sfmo5dflkzldzzwsndj74

1 reference

30 July 2022

https://api.fatcat.wiki/v0/release/rhfh2sfmo5dflkzldzzwsndj74

1 reference

30 July 2022