NPDock: a web server for protein-nucleic acid docking (Q30374706)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25977296%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

title

NPDock: a web server for protein-nucleic acid docking (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25977296%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25977296%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Wayne K. Dawson

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25977296%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Janusz Bujnicki

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25977296%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

author name string

Irina Tuszynska

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25977296%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Katarzyna Jonak

3

1 reference

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8 March 2020

language of work or name

English

0 references

publication date

14 May 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25977296%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

published in

Nucleic Acids Research

1 reference

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8 March 2020

volume

43

1 reference

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8 March 2020

issue

W1

1 reference

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8 March 2020

page(s)

W425-30

1 reference

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Creative Commons Attribution 4.0 International

8 March 2020

copyright license

start time

11 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Integrative computational modeling of protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

A knowledge-based scoring function for protein-RNA interactions derived from a statistical mechanics-based iterative method

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Sequence-specific cleavage of the RNA strand in DNA-RNA hybrids by the fusion of ribonuclease H with a zinc finger

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Crystal structures of the tRNA:m2G6 methyltransferase Trm14/TrmN from two domains of life

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Open Babel: An open chemical toolbox

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

DARS-RNP and QUASI-RNP: new statistical potentials for protein-RNA docking

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Computational approaches to 3D modeling of RNA.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

RNA and protein 3D structure modeling: similarities and differences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Protein-protein docking tested in blind predictions: the CAPRI experiment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Protein-protein docking dealing with the unknown

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Prediction and integration of regulatory and protein-protein interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

RNA-binding proteins in human genetic disease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

A protein-DNA docking benchmark

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Optimization by Simulated Annealing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

An all-atom, distance-dependent scoring function for the prediction of protein-DNA interactions from structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

PatchDock and SymmDock: servers for rigid and symmetric docking

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

A knowledge-based energy function for protein-ligand, protein-protein, and protein-DNA complexes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Protein fragment reconstruction using various modeling techniques

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Clustering of low-energy conformations near the native structures of small proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Modelling protein docking using shape complementarity, electrostatics and biochemical information

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

VMD: visual molecular dynamics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Structural genomics of RNA.

20 June 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV493

A knowledge-based potential function predicts the specificity and relative binding energy of RNA-binding proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV493

Hydrophobic docking: a proposed enhancement to molecular recognition techniques.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV493

A nonredundant structure dataset for benchmarking protein-RNA computational docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FNAR%2FGKV493

Structural prediction of protein-RNA interaction by computational docking with propensity-based statistical potentials.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

Protein docking using spherical polar Fourier correlations.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489298

26 November 2018

Identifiers

DOI

10.1093/NAR/GKV493

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25977296%20AND%20SRC:MED&resulttype=core&format=json

journals/nar/TuszynskaMJDB15

8 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25977296%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25977296%20AND%20SRC:MED&resulttype=core&format=json