SITEHOUND-web: a server for ligand binding site identification in protein structures. (Q30376571)

19 August 2017

SITEHOUND-web: a server for ligand binding site identification in protein structures. (English)

1 reference

19 August 2017

1 reference

Marylens Hernandez

1

1 reference

19 August 2017

Dario Ghersi

series ordinal

2

1 reference

19 August 2017

Roberto Sanchez

series ordinal

3

1 reference

19 August 2017

language of work or name

English

0 references

publication date

26 April 2009

1 reference

19 August 2017

Nucleic Acids Research

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19 August 2017

37

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19 August 2017

Web Server issue

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19 August 2017

W413-6

1 reference

describes a project that uses

19 August 2017

PyMOL

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pmc&rettype=xml&id=PMC2703923

cites work

Improving accuracy and efficiency of blind protein-ligand docking by focusing on predicted binding sites.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703923

Protein binding site prediction using an empirical scoring function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703923

UCSF Chimera--a visualization system for exploratory research and analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703923

Ligand binding: functional site location, similarity and docking

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703923

Inferring protein function from structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703923

Evolutionary predictions of binding surfaces and interactions.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703923

Comparative protein modelling by satisfaction of spatial restraints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703923

High‐resolution structures of adenylate kinase from yeast ligated with inhibitor Ap5A, showing the pathway of phosphoryl transfer

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703923

Predicting functionally important residues from sequence conservation.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703923

Q-SiteFinder: an energy-based method for the prediction of protein-ligand binding sites

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703923

ConSeq: the identification of functionally and structurally important residues in protein sequences

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703923

X-SITE: use of empirically derived atomic packing preferences to identify favourable interaction regions in the binding sites of proteins

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2703923

Automatic methods for predicting functionally important residues

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19398430

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP281

1 reference

journals/nar/HernandezGS09

19 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

19 August 2017

PubMed publication ID

19398430

1 reference