Quantifying the Binding Interaction between the Hypoxia-Inducible Transcription Factor and the von Hippel-Lindau Suppressor. (Q30381449)

16 October 2017

Quantifying the Binding Interaction between the Hypoxia-Inducible Transcription Factor and the von Hippel-Lindau Suppressor. (English)

1 reference

16 October 2017

3

1 reference

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7 June 2020

Christopher J. Schofield

4

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7 June 2020

Carmen Domene

1

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7 June 2020

Christian Jorgensen

2

1 reference

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7 June 2020

Alex MacKerell

5

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7 June 2020

author name string

Alexander MacKerell

5

1 reference

16 October 2017

language of work or name

1 reference

1 August 2015

1 reference

Journal of Chemical Theory and Computation

16 October 2017

1 reference

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7 June 2020

volume

11

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7 June 2020

issue

8

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7 June 2020

page(s)

3946-3954

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

7 June 2020

cites work

1 reference

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CHARMM: the biomolecular simulation program

20 June 2018

1 reference

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Evidence for a stereoelectronic effect in human oxygen sensing.

20 June 2018

1 reference

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Oxygen sensing by metazoans: the central role of the HIF hydroxylase pathway

20 June 2018

1 reference

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Automated conformational energy fitting for force-field development.

20 June 2018

1 reference

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Scalable molecular dynamics with NAMD

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

The von Hippel-Lindau protein, HIF hydroxylation, and oxygen sensing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

Coordinate regulation of the oxygen-dependent degradation domains of hypoxia-inducible factor 1 alpha

20 June 2018

1 reference

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Hydroxylation of HIF-1: oxygen sensing at the molecular level

20 June 2018

1 reference

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Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

Oxygen sensing by HIF hydroxylases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

HIF prolyl-hydroxylase 2 is the key oxygen sensor setting low steady-state levels of HIF-1alpha in normoxia

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

Structural basis for the recognition of hydroxyproline in HIF-1 alpha by pVHL

20 June 2018

1 reference

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Structure of an HIF-1alpha -pVHL complex: hydroxyproline recognition in signaling

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

A conserved family of prolyl-4-hydroxylases that modify HIF

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

C. elegans EGL-9 and mammalian homologs define a family of dioxygenases that regulate HIF by prolyl hydroxylation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

Targeting of HIF-alpha to the von Hippel-Lindau ubiquitylation complex by O2-regulated prolyl hydroxylation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

The ubiquitin-mediated proteolytic pathway: mode of action and clinical implications

20 June 2018

1 reference

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VMD: visual molecular dynamics

20 June 2018

1 reference

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Effects of point mutations in pVHL on the binding of HIF-1α.

20 June 2018

1 reference

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Good practices in free-energy calculations

26 November 2018

1 reference

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Chemical basis for the selectivity of the von Hippel Lindau tumor suppressor pVHL for prolyl-hydroxylated HIF-1alpha

26 November 2018

1 reference

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Nonlinear scaling schemes for Lennard-Jones interactions in free energy calculations.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

Stereoelectronic and steric effects in the collagen triple helix: toward a code for strand association

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

Improved treatment of the protein backbone in empirical force fields.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

Improving the efficiency and reliability of free energy perturbation calculations using overlap sampling methods

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

Electrostatic origin of the catalytic power of enzymes and the role of preorganized active sites

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

A global taxonomy of loops in globular proteins.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5283694

26 November 2018

Identifiers

DOI

10.1021/ACS.JCTC.5B00411

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26574473%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference

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7 June 2020

PubMed publication ID

26574473

1 reference