Evolutionary fingerprinting of genes. (Q30382027)

23 September 2017

Evolutionary fingerprinting of genes. (English)

1 reference

Sergei L. Kosakovsky Pond

23 September 2017

Konrad Scheffler

2

0 references

series ordinal

1

object named as

Sergei L Kosakovsky Pond

1 reference

23 September 2017

Michael B Gravenor

3

1 reference

PMCID

2877558

23 September 2017

Art F Y Poon

series ordinal

4

1 reference

PMCID

2877558

23 September 2017

Simon D W Frost

series ordinal

5

1 reference

23 September 2017

28 October 2009

1 reference

Molecular Biology and Evolution

23 September 2017

1 reference

23 September 2017

27

1 reference

23 September 2017

3

1 reference

23 September 2017

520-536

1 reference

The influenza virus resource at the National Center for Biotechnology Information

23 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Robust inference of positive selection from recombining coding sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Adaptation to different human populations by HIV-1 revealed by codon-based analyses

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

A Dirichlet process model for detecting positive selection in protein-coding DNA sequences.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Hearing silence: non-neutral evolution at synonymous sites in mammals

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Site-to-site variation of synonymous substitution rates

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

A scan for positively selected genes in the genomes of humans and chimpanzees

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Datamonkey: rapid detection of selective pressure on individual sites of codon alignments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Not so different after all: a comparison of methods for detecting amino acid sites under selection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Bayes empirical bayes inference of amino acid sites under positive selection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

HyPhy: hypothesis testing using phylogenies

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Detailed mapping of RNA secondary structures in core and NS5B-encoding region sequences of hepatitis C virus by RNase cleavage and novel bioinformatic prediction methods.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Comparative study of adaptive molecular evolution in different human immunodeficiency virus groups and subtypes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Adaptive evolution of genes and gene families

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Thermodynamic and phylogenetic prediction of RNA secondary structures in the coding region of hepatitis C virus

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Codon-substitution models for heterogeneous selection pressure at amino acid sites

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Selection on silent sites in the rodent H3 histone gene family

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Positive selection is a general phenomenon in the evolution of abalone sperm lysin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Evidence that natural selection acts on silent mutation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

The neighbor-joining method: a new method for reconstructing phylogenetic trees

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Hepatitis C virus : types, subtypes, and beyond

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Evolutionary model selection with a genetic algorithm: a case study using stem RNA.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Automated phylogenetic detection of recombination using a genetic algorithm.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Codon volatility does not reflect selective pressure on the HIV-1 genome

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

A genetic algorithm approach to detecting lineage-specific variation in selection pressure.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2877558

Pervasive adaptive evolution in mammalian fertilization proteins

26 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19864470

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Potential impact of recombination on sitewise approaches for detecting positive natural selection

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19864470

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evidence for purifying selection acting on silent sites in BRCA1

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19864470

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/MOLBEV/MSP260

1 reference

23 September 2017

1 reference

23 September 2017

1 reference

PMCID

2877558