Protein interface conservation across structure space (Q30390154)

29 September 2017

Protein interface conservation across structure space (English)

1 reference

29 September 2017

0 references

3

Raquel Norel

1 reference

29 September 2017

Qiangfeng Cliff Zhang

series ordinal

1

1 reference

29 September 2017

Donald Petrey

series ordinal

2

1 reference

29 September 2017

Barry H Honig

series ordinal

4

1 reference

29 September 2017

language of work or name

English

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publication date

1 June 2010

1 reference

Proceedings of the National Academy of Sciences of the United States of America

29 September 2017

6

1 reference

based on heuristic

inferred from page(s)

published in

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29 September 2017

107

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29 September 2017

24

1 reference

29 September 2017

10896-10901

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Structural relationships among proteins with different global topologies and their implications for function annotation strategies

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Protein-protein docking benchmark version 3.0.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Data growth and its impact on the SCOP database: new developments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Interaction-site prediction for protein complexes: a critical assessment

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Deciphering Protein–Protein Interactions. Part II. Computational Methods to Predict Protein and Domain Interaction Partners

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Deciphering protein-protein interactions. Part I. Experimental techniques and databases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

IntAct--open source resource for molecular interaction data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

The many faces of protein-protein interactions: A compendium of interface geometry

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Protein binding site prediction using an empirical scoring function

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Protein complex compositions predicted by structural similarity

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Finding biologically relevant protein domain interactions: conserved binding mode analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

BioGRID: a general repository for interaction datasets

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

High-throughput two-hybrid analysis. The promise and the peril

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Connecting the protein structure universe by using sparse recurring fragments.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Localization of protein-binding sites within families of proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Fragnostic: walking through protein structure space

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

GRASP2: visualization, surface properties, and electrostatics of macromolecular structures and sequences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Computational methods of analysis of protein-protein interactions

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

The geometry of domain combination in proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Supersites within superfolds. Binding site similarity in the absence of homology.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Protein-protein interfaces: architectures and interactions in protein-protein interfaces and in protein cores. Their similarities and differences

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Comparative protein modelling by satisfaction of spatial restraints

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2890749

Computational Prediction of Protein–Protein Interactions

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1005894107

Structure-based assembly of protein complexes in yeast.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1005894107

The Relationship Between Sequence and Interaction Divergence in Proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1005894107

Survey of the geometric association of domain-domain interfaces.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1005894107

Divergence of interdomain geometry in two-domain proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1005894107

Biological Units and their Effect upon the Properties and Prediction of Protein–Protein Interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1005894107

Favorable scaffolds: proteins with different sequence, structure and function may associate in similar ways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1005894107

An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1005894107

The third CAPRI assessment meeting Toronto, Canada, April 20-21, 2007.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1005894107

ProMate: a structure based prediction program to identify the location of protein-protein binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1005894107

PQS: a protein quaternary structure file server.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1005894107

Conservation of Orientation and Sequence in Protein Domain–Domain Interactions

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20534496

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1005894107

1 reference

29 September 2017

0 references

1 reference

29 September 2017

1 reference