Interaction-site prediction for protein complexes: a critical assessment (Q36857223)

16 August 2017

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title

Interaction-site prediction for protein complexes: a critical assessment (English)

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16 August 2017

Huan-Xiang Zhou

1

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PubMed ID

17586545

16 August 2017

Sanbo Qin

series ordinal

2

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PubMed ID

17586545

16 August 2017

language of work or name

English

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publication date

22 June 2007

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16 August 2017

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16 August 2017

23

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16 August 2017

2203-2209

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16 August 2017

17

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Analysis and prediction of DNA-binding proteins and their binding residues based on composition, sequence and structural information.

16 August 2017

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Statistical analysis and prediction of protein-protein interfaces

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21 January 2018

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Insights into protein-protein interfaces using a Bayesian network prediction method

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Structural insight into interactions between dihydrolipoamide dehydrogenase (E3) and E3 binding protein of human pyruvate dehydrogenase complex

21 January 2018

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Predicting protein interaction sites: binding hot-spots in protein-protein and protein-ligand interfaces.

21 January 2018

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Efficient restraints for protein-protein docking by comparison of observed amino acid substitution patterns with those predicted from local environment.

21 January 2018

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Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data

21 January 2018

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ZDOCK: an initial-stage protein-docking algorithm.

21 January 2018

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Exploiting sequence and structure homologs to identify protein-protein binding sites

21 January 2018

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Side-chain conformational entropy at protein-protein interfaces.

21 January 2018

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The atomic structure of protein-protein recognition sites

21 January 2018

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Cation-pi interactions in protein-protein interfaces

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WHISCY: what information does surface conservation yield? Application to data-driven docking.

21 January 2018

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Prediction of protein--protein interaction sites in heterocomplexes with neural networks.

21 January 2018

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Identification of protein-protein interaction sites from docking energy landscapes.

21 January 2018

1 reference

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Modelling interaction sites in protein domains with interaction profile hidden Markov models.

21 January 2018

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Refinement of unbound protein docking studies using biological knowledge

21 January 2018

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An algorithm for predicting protein-protein interaction sites: Abnormally exposed amino acid residues and secondary structure elements

21 January 2018

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Prediction of protein-protein interaction sites using patch analysis.

21 January 2018

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Prediction of protein-protein interaction sites using support vector machines.

21 January 2018

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PIER: protein interface recognition for structural proteomics.

21 January 2018

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Using evolutionary and structural information to predict DNA-binding sites on DNA-binding proteins.

21 January 2018

1 reference

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ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures

21 January 2018

1 reference

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Protein-protein interaction site prediction based on conditional random fields.

21 January 2018

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https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTM323

Protein binding site prediction using an empirical scoring function

21 January 2018

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An evolutionary trace method defines binding surfaces common to protein families

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Protein-Protein Docking Benchmark 2.0: an update

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SHARP2: protein-protein interaction predictions using patch analysis.

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ProMate: a structure based prediction program to identify the location of protein-protein binding sites

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1 reference

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Predicted protein-protein interaction sites from local sequence information.

21 January 2018

1 reference

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Prediction-based fingerprints of protein-protein interactions.

21 January 2018

1 reference

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An evolution based classifier for prediction of protein interfaces without using protein structures.

21 January 2018

1 reference

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Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex

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Predicting binding sites of hydrolase-inhibitor complexes by combining several methods

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Structure of the forkhead domain of FOXP2 bound to DNA

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DISPLAR: an accurate method for predicting DNA-binding sites on protein surfaces

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Mutations in LRP5 or FZD4 underlie the common familial exudative vitreoretinopathy locus on chromosome 11q.

21 January 2018

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Scoring docking models with evolutionary information.

21 January 2018

1 reference

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Data-driven docking: HADDOCK's adventures in CAPRI.

21 January 2018

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Predicting protein interaction sites from residue spatial sequence profile and evolution rate.

21 January 2018

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Inferring protein-protein interacting sites using residue conservation and evolutionary information.

21 January 2018

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BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences.

21 January 2018

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On the origin and highly likely completeness of single-domain protein structures.

21 January 2018

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Improving the understanding of human genetic diseases through predictions of protein structures and protein-protein interaction sites

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Prediction of protein interaction sites from sequence profile and residue neighbor list.

21 January 2018

1 reference

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10.1093/BIOINFORMATICS/BTM323

21 January 2018

Identifiers

DOI

1 reference

journals/bioinformatics/ZhouQ07

16 August 2017

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DBLP Dataset 2021-01-02

28 January 2021

1 reference

PubMed ID

17586545