De novo design of the hydrophobic core of ubiquitin (Q30427609)

8 November 2017

De novo design of the hydrophobic core of ubiquitin (English)

1 reference

8 November 2017

1 reference

G A Lazar

1

1 reference

8 November 2017

J R Desjarlais

series ordinal

2

1 reference

8 November 2017

T M Handel

series ordinal

3

1 reference

8 November 2017

1 June 1997

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8 November 2017

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8 November 2017

6

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8 November 2017

6

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8 November 2017

1167-1178

1 reference

A test of the "jigsaw puzzle" model for protein folding by multiple methionine substitutions within the core of T4 lysozyme

8 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

What makes a protein a protein? Hydrophobic core designs that specify stability and structural properties

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Protein design automation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Active barnase variants with completely random hydrophobic cores

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

1H, 13C and 15N chemical shift referencing in biomolecular NMR

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

De novo design of the hydrophobic cores of proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

The crystal structure of a mutant protein with altered but improved hydrophobic core packing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

The role of backbone flexibility in the accommodation of variants that repack the core of T4 lysozyme

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

A switch between two-, three-, and four-stranded coiled coils in GCN4 leucine zipper mutants

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Thermodynamics of ubiquitin unfolding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Betadoublet: de novo design, synthesis, and characterization of a beta-sandwich protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

De novo design of beta-sheet proteins

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

An analysis of packing in the protein folding problem

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Optimal sequence selection in proteins of known structure by simulated evolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

De novo design and creation of a stable artificial protein.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Energy minimization method using automata network for sequence and side-chain conformation prediction from given backbone geometry.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Engineering of betabellin 14D: disulfide-induced folding of a beta-sheet protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Redesigning the hydrophobic core of a four-helix-bundle protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Characterization of a helical protein designed from first principles

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Structure of ubiquitin refined at 1.8 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Gene synthesis, expression, structures, and functional activities of site-specific mutants of ubiquitin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Calculation of protein extinction coefficients from amino acid sequence data

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

De novo design, expression, and characterization of Felix: a four-helix bundle protein of native-like sequence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Dominant forces in protein folding

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Use of T7 RNA polymerase to direct expression of cloned genes

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

The role of internal packing interactions in determining the structure and stability of a protein

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Database algorithm for generating protein backbone and side-chain co-ordinates from a C alpha trace application to model building and detection of co-ordinate errors.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Prediction of protein side-chain conformation by packing optimization.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

A new approach to the rapid determination of protein side chain conformations

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Accurate prediction of the stability and activity effects of site-directed mutagenesis on a protein core

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Design and structural analysis of alternative hydrophobic core packing arrangements in bacteriophage T4 lysozyme

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Response of a protein structure to cavity-creating mutations and its relation to the hydrophobic effect

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Fast internal main-chain dynamics of human ubiquitin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Early hydrogen-bonding events in the folding reaction of ubiquitin

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Empirical Predictions of Protein Conformation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

Areas, volumes, packing and protein structure

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2143711

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

20 June 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRO.5560060605

Equilibrium unfolding of Escherichia coli ribonuclease H: characterization of a partially folded state

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRO.5560060605

Two-dimensional 1H NMR study of human ubiquitin: a main chain directed assignment and structure analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRO.5560060605

The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRO.5560060605

Protein design by binary patterning of polar and nonpolar amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRO.5560060605

Folding and stability of a tryptophan-containing mutant of ubiquitin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRO.5560060605

Study of the "molten globule" intermediate state in protein folding by a hydrophobic fluorescent probe

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRO.5560060605

Contributions of the large hydrophobic amino acids to the stability of staphylococcal nuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPRO.5560060605

Binding of naphthalene dyes to the N and A conformers of bovine alpha-lactalbumin

21 January 2018

1 reference

12 December 2020

Sequential 1H NMR assignments and secondary structure identification of human ubiquitin

1 reference

12 December 2020

Analysis of the relationship between side-chain conformation and secondary structure in globular proteins

1 reference

12 December 2020

Theoretical study of the contribution of aromatic side chains to the circular dichroism of basic bovine pancreatic trypsin inhibitor

1 reference

12 December 2020

Construction of side-chains in homology modelling. Application to the C-terminal lobe of rhizopuspepsin

1 reference

12 December 2020

Evidence for a three-state model of protein folding from kinetic analysis of ubiquitin variants with altered core residues

1 reference

12 December 2020

Internal dynamics of human ubiquitin revealed by 13C-relaxation studies of randomly fractionally labeled protein

1 reference

12 December 2020

High-level misincorporation of lysine for arginine at AGA codons in a fusion protein expressed in Escherichia coli

1 reference

12 December 2020

Identifiers

DOI

10.1002/PRO.5560060605

1 reference

8 November 2017

1 reference

8 November 2017

PubMed publication ID

9194177

1 reference