Use of plasmon coupling to reveal the dynamics of DNA bending and cleavage by single EcoRV restriction enzymes (Q30479058)

11 November 2017

Use of plasmon coupling to reveal the dynamics of DNA bending and cleavage by single EcoRV restriction enzymes (English)

1 reference

11 November 2017

4

1 reference

22 June 2017

Björn M Reinhard

1

1 reference

11 November 2017

Sassan Sheikholeslami

series ordinal

2

1 reference

11 November 2017

Alexander Mastroianni

series ordinal

3

1 reference

11 November 2017

Jan Liphardt

series ordinal

5

1 reference

11 November 2017

language of work or name

English

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publication date

16 February 2007

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11 November 2017

6

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Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

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11 November 2017

104

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11 November 2017

8

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11 November 2017

2667-2672

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The fluorescent toolbox for assessing protein location and function

11 November 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Kinesin and dynein move a peroxisome in vivo: a tug-of-war or coordinated movement?

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Structural insights into the activity of enhancer-binding proteins.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Mechanically driven ATP synthesis by F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Kinesin walks hand-over-hand

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Simultaneous DNA binding and bending by EcoRV endonuclease observed by real-time fluorescence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Ethylene glycol monolayer protected nanoparticles for eliminating nonspecific binding with biological molecules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Single-molecule detection of DNA hybridization

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Ten years of tension: single-molecule DNA mechanics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Type II restriction endonucleases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Correlating structural dynamics and function in single ribozyme molecules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Binuclear Metallohydrolases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

The bacteriophage straight phi29 portal motor can package DNA against a large internal force

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Force measurements on single molecular contacts through evanescent wave microscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Processive translocation and DNA unwinding by individual RecBCD enzyme molecules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Catalytic roles of divalent metal ions in phosphoryl transfer by EcoRV endonuclease

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Single-molecule enzymology

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Fluorescence spectroscopy of single biomolecules.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Structure of the DNA-binding domains from NFAT, Fos and Jun bound specifically to DNA

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Conformational transitions and structural deformability of EcoRV endonuclease revealed by crystallographic analysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Recognition and cleavage of DNA by type-II restriction endonucleases

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Probing the interaction between two single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

The crystal structure of EcoRV endonuclease and of its complexes with cognate and non-cognate DNA fragments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Structure-function correlation for the EcoRV restriction enzyme: from non-specific binding to specific DNA cleavage

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Interaction of the restriction endonuclease EcoRV with the deoxyguanosine and deoxycytidine bases in its recognition sequence

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

DNA-bend modulation in a repressor-to-activator switching mechanism

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Rapid reaction analysis of the catalytic cycle of the EcoRV restriction endonuclease.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Structural basis for DNA bending by the architectural transcription factor LEF-1

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

DNA sequence determinants of CAP-induced bending and protein binding affinity.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1815239

Kinked-helices model of the nicotinic acetylcholine receptor ion channel and its complexes with blockers: simulation by the Monte Carlo minimization method

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607826104

A molecular ruler based on plasmon coupling of single gold and silver nanoparticles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607826104

Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607826104

Calibration of dynamic molecular rulers based on plasmon coupling between gold nanoparticles

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607826104

Optical Constants of the Noble Metals

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607826104

Divalent metal ions at the active sites of the EcoRV and EcoRI restriction endonucleases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607826104

Decreased resistance to bacterial infection and granulocyte defects in IAP-deficient mice.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0607826104

EcoRV restriction endonuclease binds all DNA sequences with equal affinity

21 January 2018

1 reference

12 December 2020

Photostability of dye molecules trapped in solid matrices

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12 December 2020

A hybridization model for the plasmon response of complex nanostructures

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12 December 2020

DNA recognition and nucleosome organization

1 reference

12 December 2020

Light-scattering submicroscopic particles as highly fluorescent analogs and their use as tracer labels in clinical and biological applications

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12 December 2020

Identifiers

DOI

10.1073/PNAS.0607826104

1 reference

11 November 2017

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11 November 2017

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