How subunit coupling produces the gamma-subunit rotary motion in F1-ATPase (Q30481228)

14 August 2017

How subunit coupling produces the gamma-subunit rotary motion in F1-ATPase (English)

1 reference

14 August 2017

2

Martin Karplus

1 reference

14 August 2017

Jingzhi Pu

1

1 reference

PMCID

2234114

14 August 2017

language of work or name

English

0 references

publication date

23 January 2008

1 reference

Proceedings of the National Academy of Sciences of the United States of America

14 August 2017

1 reference

14 August 2017

105

1 reference

14 August 2017

1192-1197

1 reference

14 August 2017

4

1 reference

Identification of the betaTP site in the x-ray structure of F1-ATPase as the high-affinity catalytic site

14 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Ground state structure of F1-ATPase from bovine heart mitochondria at 1.9 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Novel features of the rotary catalytic mechanism revealed in the structure of yeast F1 ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

On the structure of the stator of the mitochondrial ATP synthase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

How azide inhibits ATP hydrolysis by the F-ATPases.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

The rotor tip inside a bearing of a thermophilic F1-ATPase is dispensable for torque generation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

The peripheral stalk of the mitochondrial ATP synthase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Folding-based molecular simulations reveal mechanisms of the rotary motor F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

A structure-based model for the synthesis and hydrolysis of ATP by F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Large amplitude conformational change in proteins explored with a plastic network model: adenylate kinase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Mechanically driven ATP synthesis by F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Chemomechanical coupling in F1-ATPase revealed by simultaneous observation of nucleotide kinetics and rotation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Catalysis and rotation of F1 motor: cleavage of ATP at the catalytic site occurs in 1 ms before 40 degree substep rotation

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

A model for the cooperative free energy transduction and kinetics of ATP hydrolysis by F 1 -ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

The missing link between thermodynamics and structure in F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

The molecular mechanism of ATP synthesis by F1F0-ATP synthase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Nanoseconds molecular dynamics simulation of primary mechanical energy transfer steps in F1-ATP synthase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Structure of bovine mitochondrial F(1)-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

The structure of the central stalk in bovine F(1)-ATPase at 2.4 A resolution

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Energy transduction in the F1 motor of ATP synthase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

ATP synthase: an electrochemical transducer with rotatory mechanics

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

The ATP synthase--a splendid molecular machine

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Catalytic mechanism of F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Direct observation of the rotation of F1-ATPase

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

The binding change mechanism for ATP synthase--some probabilities and possibilities

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Specific placement of tryptophan in the catalytic sites of Escherichia coli F1-ATPase provides a direct probe of nucleotide binding: maximal ATP hydrolysis occurs with three sites occupied

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Structure at 2.8 A resolution of F1-ATPase from bovine heart mitochondria

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2234114

Coupling of rotation and catalysis in F(1)-ATPase revealed by single-molecule imaging and manipulation.

20 June 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708746105

The ionic track in the F1-ATPase from the thermophilic Bacillus PS3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708746105

Energy transfer from adenosine triphosphate

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708746105

Interactions among γR268, γQ269, and the β Subunit Catch Loop of Escherichia coli F1-ATPase Are Important for Catalytic Activity

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708746105

GammaM23K, gammaM232K, and gammaL77K single substitutions in the TF1-ATPase lower ATPase activity by disrupting a cluster of hydrophobic side chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708746105

F-ATPase: forced full rotation of the rotor despite covalent cross-link with the stator

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708746105

Rotary F1-ATPase. Is the C-terminus of subunit gamma fixed or mobile?

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708746105

F1-ATPase, the C-terminal end of subunit gamma is not required for ATP hydrolysis-driven rotation

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708746105

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708746105

Molecular dynamics with coupling to an external bath

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0708746105

Targeted molecular dynamics: a new approach for searching pathways of conformational transitions

21 January 2018

1 reference

12 December 2020

Differentiation of catalytic sites on Escherichia coli F1ATPase by laser photoactivated labeling with [3H]-2-Azido-ATP using the mutant beta Glu381Cys:epsilonSer108Cys to identify different beta subunits by their interactions with gamma and epsilon

1 reference

12 December 2020

A dynamic analysis of the rotation mechanism for conformational change in F(1)-ATPase

1 reference

12 December 2020

Simulation of conformational transitions by the restricted perturbation-targeted molecular dynamics method

1 reference

12 December 2020

F1-ATPase rotates by an asymmetric, sequential mechanism using all three catalytic subunits

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0708746105

1 reference

14 August 2017

0 references

1 reference

14 August 2017

1 reference

PMCID

2234114